An atlas of B-cell clonal distribution in the human body

W Meng, B Zhang, GW Schwartz, AM Rosenfeld… - Nature …, 2017 - nature.com
B-cell responses result in clonal expansion, and can occur in a variety of tissues. To define
how B-cell clones are distributed in the body, we sequenced 933,427 B-cell clonal lineages …

TooManyCells identifies and visualizes relationships of single-cell clades

GW Schwartz, Y Zhou, J Petrovic, M Fasolino, L Xu… - Nature …, 2020 - nature.com
Identifying and visualizing transcriptionally similar cells is instrumental for accurate
exploration of the cellular diversity revealed by single-cell transcriptomics. However, widely …

Spatial negative co-location pattern directional mining algorithm with join-based prevalence

G Zhou, Z Wang, Q Li - Remote Sensing, 2022 - mdpi.com
It is usually difficult for prevalent negative co-location patterns to be mined and calculated.
This paper proposes a join-based prevalent negative co-location mining algorithm, which …

F-NSP+: A fast negative sequential patterns mining method with self-adaptive data storage

X Dong, Y Gong, L Cao - Pattern Recognition, 2018 - Elsevier
Mining negative sequential patterns (NSP) is an important tool for nonoccurring behavior
analysis, and it is much more challenging than mining positive sequential patterns (PSPs) …

[HTML][HTML] Dynamic establishment and maintenance of the human intestinal B cell population and repertoire following transplantation

J Fu, T Hsiao, E Waffarn, W Meng, KD Long, K Frangaj… - medRxiv, 2023 - ncbi.nlm.nih.gov
It is unknown how intestinal B cell populations and B cell receptor (BCR) repertoires are
established and maintained over time in humans. Following intestinal transplantation (ITx) …

Dynamic establishment and maintenance of the human intestinal B cell population and repertoire following transplantation in a pediatric-dominated cohort

J Fu, T Hsiao, E Waffarn, W Meng, KD Long… - Frontiers in …, 2024 - frontiersin.org
Introduction It is unknown how intestinal B cell populations and B cell receptor (BCR)
repertoires are established and maintained over time in humans. Following intestinal …

Differential integration of transcriptome and proteome identifies pan-cancer prognostic biomarkers

GW Schwartz, J Petrovic, Y Zhou, RB Faryabi - Frontiers in genetics, 2018 - frontiersin.org
High-throughput analysis of the transcriptome and proteome individually are used to
interrogate complex oncogenic processes in cancer. However, an outstanding challenge is …

[PDF][PDF] F-NSP+: A Fast Negative Sequential Patterns Mining Method with Self-adaption Data Storage Strategy

X Donga, Y Gonga, L Caob - 203.170.84.89
Mining Negative sequential patterns (NSP) is much more challenging than mining positive
sequential patterns (PSP) due to the high computational complexity and huge search space …

[PDF][PDF] Tools for the analysis of B-cell clonal diversity in immune repertoires

B Zhang - 2018 - researchdiscovery.drexel.edu
The lymphocytes of an organism harbor a diverse collection or repertoire of antigen
receptors (antibodies (Ab) on B cells and T cell receptors (TCR) on T cells). This diversity of …

[HTML][HTML] ED SUMM: B cell VH region repertoire sequencing of 8 anatomical sites in 6 human donors reveals distinct networks of clone distribution: An atlas of B cell …

W Mengˆ, B Zhangˆ, GW Schwartz… - Nature …, 2017 - ncbi.nlm.nih.gov
B cell responses result in clonal expansion, and can occur in a variety of tissues. To define
how B cell clones are distributed in the body, we sequenced 933,427 B cell clonal lineages …