Recombination and the maintenance of plant organelle genome stability
A Maréchal, N Brisson - New Phytologist, 2010 - Wiley Online Library
Like their nuclear counterpart, the plastid and mitochondrial genomes of plants have to be
faithfully replicated and repaired to ensure the normal functioning of the plant. Inability to …
faithfully replicated and repaired to ensure the normal functioning of the plant. Inability to …
Mining microsatellites in eukaryotic genomes
PC Sharma, A Grover, G Kahl - Trends in biotechnology, 2007 - cell.com
During recent decades, microsatellites have become the most popular source of genetic
markers. More recently, the availability of enormous sequence data for a large number of …
markers. More recently, the availability of enormous sequence data for a large number of …
CPGAVAS2, an integrated plastome sequence annotator and analyzer
L Shi, H Chen, M Jiang, L Wang, X Wu… - Nucleic acids …, 2019 - academic.oup.com
We previously developed a web server CPGAVAS for annotation, visualization and
GenBank submission of plastome sequences. Here, we upgrade the server into CPGAVAS2 …
GenBank submission of plastome sequences. Here, we upgrade the server into CPGAVAS2 …
Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning …
Cultivated potato is a clonally propagated autotetraploid species with a highly
heterogeneous genome. Phased assemblies of six cultivars including two chromosome …
heterogeneous genome. Phased assemblies of six cultivars including two chromosome …
Emergence and global spread of epidemic healthcare-associated Clostridium difficile
M He, F Miyajima, P Roberts, L Ellison, DJ Pickard… - Nature …, 2013 - nature.com
Abstract Epidemic C. difficile (027/BI/NAP1) has rapidly emerged in the past decade as the
leading cause of antibiotic-associated diarrhea worldwide. However, the key events in …
leading cause of antibiotic-associated diarrhea worldwide. However, the key events in …
Versatile and open software for comparing large genomes
The newest version of MUMmer easily handles comparisons of large eukaryotic genomes at
varying evolutionary distances, as demonstrated by applications to multiple genomes. Two …
varying evolutionary distances, as demonstrated by applications to multiple genomes. Two …
Global variation in copy number in the human genome
Copy number variation (CNV) of DNA sequences is functionally significant but has yet to be
fully ascertained. We have constructed a first-generation CNV map of the human genome …
fully ascertained. We have constructed a first-generation CNV map of the human genome …
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
I Grissa, G Vergnaud, C Pourcel - Nucleic acids research, 2007 - academic.oup.com
Clustered regularly interspaced short palindromic repeats (CRISPRs) constitute a particular
family of tandem repeats found in a wide range of prokaryotic genomes (half of eubacteria …
family of tandem repeats found in a wide range of prokaryotic genomes (half of eubacteria …
Thirteen Camelliachloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships
Background Camellia is an economically and phylogenetically important genus in the family
Theaceae. Owing to numerous hybridization and polyploidization, it is taxonomically and …
Theaceae. Owing to numerous hybridization and polyploidization, it is taxonomically and …
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
D Ellinghaus, S Kurtz, U Willhoeft - BMC bioinformatics, 2008 - Springer
Background Transposable elements are abundant in eukaryotic genomes and it is believed
that they have a significant impact on the evolution of gene and chromosome structure …
that they have a significant impact on the evolution of gene and chromosome structure …