Cancer evolution: Darwin and beyond

R Vendramin, K Litchfield, C Swanton - The EMBO journal, 2021 - embopress.org
Clinical and laboratory studies over recent decades have established branched evolution as
a feature of cancer. However, while grounded in somatic selection, several lines of evidence …

Methods and applications of genome-wide profiling of DNA damage and rare mutations

GP Pfeifer, SG Jin - Nature Reviews Genetics, 2024 - nature.com
DNA damage is a threat to genome integrity and can be a cause of many human diseases,
owing to either changes in the chemical structure of DNA or conversion of the damage into a …

Extensive phylogenies of human development inferred from somatic mutations

THH Coorens, L Moore, PS Robinson, R Sanghvi… - Nature, 2021 - nature.com
Starting from the zygote, all cells in the human body continuously acquire mutations.
Mutations shared between different cells imply a common progenitor and are thus naturally …

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

SC Dentro, I Leshchiner, K Haase, M Tarabichi… - Cell, 2021 - cell.com
Intra-tumor heterogeneity (ITH) is a mechanism of therapeutic resistance and therefore an
important clinical challenge. However, the extent, origin, and drivers of ITH across cancer …

MutationalPatterns: the one stop shop for the analysis of mutational processes

F Manders, AM Brandsma, J de Kanter, M Verheul… - BMC genomics, 2022 - Springer
Background The collective of somatic mutations in a genome represents a record of
mutational processes that have been operative in a cell. These processes can be …

Selective pressures of platinum compounds shape the evolution of therapy-related myeloid neoplasms

EJM Bertrums, JK de Kanter, LLM Derks… - Nature …, 2024 - nature.com
Therapy-related myeloid neoplasms (t-MN) arise as a complication of chemo-and/or
radiotherapy. Although t-MN can occur both in adult and childhood cancer survivors, the …

[HTML][HTML] The hammer and the dance of cell cycle control

A Panagopoulos, M Altmeyer - Trends in biochemical sciences, 2021 - cell.com
Cell cycle checkpoints secure ordered progression from one cell cycle phase to the next.
They are important to signal cell stress and DNA lesions and to stop cell cycle progression …

DNA lesion bypass and the stochastic dynamics of transcription-coupled repair

MD Nicholson, CJ Anderson… - Proceedings of the …, 2024 - National Acad Sciences
DNA base damage is a major source of oncogenic mutations and disruption to gene
expression. The stalling of RNA polymerase II (RNAP) at sites of DNA damage and the …

The origin of human mutation in light of genomic data

VB Seplyarskiy, S Sunyaev - Nature Reviews Genetics, 2021 - nature.com
Despite years of active research into the role of DNA repair and replication in mutagenesis,
surprisingly little is known about the origin of spontaneous human mutation in the germ line …

Antiviral treatment causes a unique mutational signature in cancers of transplantation recipients

JK de Kanter, F Peci, E Bertrums, AR Huber… - Cell stem cell, 2021 - cell.com
Genetic instability is a major concern for successful application of stem cells in regenerative
medicine. However, the mutational consequences of the most applied stem cell therapy in …