Runs of homozygosity reveal past bottlenecks and contemporary inbreeding across diverging populations of an Island‐colonizing bird

CA Martin, EC Sheppard, JC Illera, A Suh… - Molecular …, 2023 - Wiley Online Library
Genomes retain evidence of the demographic history and evolutionary forces that have
shaped populations and drive speciation. Across island systems, contemporary patterns of …

Little adaptive potential in a threatened passerine bird

P de Villemereuil, A Rutschmann, KD Lee, JG Ewen… - Current Biology, 2019 - cell.com
Threatened species face numerous threats, including future challenges triggered by global
change. A possible way to cope with these challenges is through adaptive evolution, which …

Distance, elevation and environment as drivers of diversity and divergence in bumble bees across latitude and altitude

JM Jackson, ML Pimsler, KJ Oyen… - Molecular …, 2018 - Wiley Online Library
Identifying drivers of dispersal limitation and genetic differentiation is a key goal in
biogeography. We examine patterns of population connectivity and genetic diversity using …

Abundant recent activity of retrovirus‐like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes

A Suh, L Smeds, H Ellegren - Molecular ecology, 2018 - Wiley Online Library
Transposable elements (TE s) are genomic parasites capable of inserting virtually anywhere
in the host genome, with manifold consequences for gene expression, DNA methylation and …

Genomic signatures of inbreeding in a critically endangered parrot, the kākāpō

Y Foster, L Dutoit, S Grosser, N Dussex, BJ Foster… - G3, 2021 - academic.oup.com
Events of inbreeding are inevitable in critically endangered species. Reduced population
sizes and unique life-history traits can increase the severity of inbreeding, leading to …

Phylogenomics reveals that mitochondrial capture and nuclear introgression characterize skua species proposed to be of hybrid origin

EK Mikkelsen, JT Weir - Systematic Biology, 2023 - academic.oup.com
The skuas and jaegers (Stercorariidae) are an enigmatic family of seven seabird species
that breed at Arctic and Antarctic latitudes. The phylogenetic relationships amongst the …

Chromosome-level assembly of the Atlantic silverside genome reveals extreme levels of sequence diversity and structural genetic variation

A Tigano, A Jacobs, AP Wilder, A Nand… - Genome Biology and …, 2021 - academic.oup.com
The levels and distribution of standing genetic variation in a genome can provide a wealth of
insights about the adaptive potential, demographic history, and genome structure of a …

The genomes of Darwin's primroses reveal chromosome‐scale adaptive introgression and differential permeability of species boundaries

RL Stubbs, S Theodoridis, E Mora‐Carrera… - New …, 2024 - Wiley Online Library
Introgression is an important source of genetic variation that can determine species
adaptation to environmental conditions. Yet, definitive evidence of the genomic and adaptive …

Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs

MA Chase, H Ellegren, CF Mugal - Evolution, 2021 - academic.oup.com
A current debate within population genomics surrounds the relevance of patterns of genomic
differentiation between closely related species for our understanding of adaptation and …

Demography and Natural Selection Have Shaped Genetic Variation in the Widely Distributed Conifer Norway Spruce (Picea abies)

X Wang, C Bernhardsson… - Genome biology and …, 2020 - academic.oup.com
Under the neutral theory, species with larger effective population size are expected to harbor
higher genetic diversity. However, across a wide variety of organisms, the range of genetic …