Recent applications of artificial intelligence from histopathologic image-based prediction of microsatellite instability in solid cancers: a systematic review

MR Alam, J Abdul-Ghafar, K Yim, N Thakur, SH Lee… - Cancers, 2022 - mdpi.com
Simple Summary Although the evaluation of microsatellite instability (MSI) is important for
immunotherapy, it is not feasible to test MSI in all cancers due to the additional cost and …

Development and validation of deep learning classifiers to detect Epstein-Barr virus and microsatellite instability status in gastric cancer: a retrospective multicentre …

HS Muti, LR Heij, G Keller, M Kohlruss… - The Lancet Digital …, 2021 - thelancet.com
Background Response to immunotherapy in gastric cancer is associated with microsatellite
instability (or mismatch repair deficiency) and Epstein-Barr virus (EBV) positivity. We …

Deep learning of histopathological features for the prediction of tumour molecular genetics

P Murchan, C Ó'Brien, S O'Connell, CS McNevin… - Diagnostics, 2021 - mdpi.com
Advanced diagnostics are enabling cancer treatments to become increasingly tailored to the
individual through developments in immunotherapies and targeted therapies. However, long …

A federated learning system for histopathology image analysis with an orchestral stain-normalization GAN

Y Shen, A Sowmya, Y Luo, X Liang… - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
Currently, data-driven based machine learning is considered one of the best choices in
clinical pathology analysis, and its success is subject to the sufficiency of digitized slides …

PPsNet: An improved deep learning model for microsatellite instability high prediction in colorectal cancer from whole slide images

J Lou, J Xu, Y Zhang, Y Sun, A Fang, J Liu… - Computer Methods and …, 2022 - Elsevier
Abstract Background and Objective Recent studies have shown that colorectal cancer
(CRC) patients with microsatellite instability high (MSI-H) are more likely to benefit from …

Identify representative samples by conditional random field of cancer histology images

Y Shen, D Shen, J Ke - IEEE Transactions on Medical Imaging, 2022 - ieeexplore.ieee.org
Pathology analysis is crucial to precise cancer diagnoses and the succeeding treatment
plan as well. To detect abnormality in histopathology images with prevailing patch-based …

Mine local homogeneous representation by interaction information clustering with unsupervised learning in histopathology images

J Ke, Y Shen, Y Lu, Y Guo, D Shen - Computer Methods and Programs in …, 2023 - Elsevier
Background and objective: The success of data-driven deep learning for histopathology
images often depends on high-quality training sets and fine-grained annotations. However …

Sampling based tumor recognition in whole-slide histology image with deep learning approaches

Y Shen, J Ke - IEEE/ACM Transactions on Computational …, 2021 - ieeexplore.ieee.org
Histopathological identification of tumor tissue is one of the routine pathological diagnoses
for pathologists. Recently, computational pathology has been successfully interpreted by a …

Su-sampling based active learning for large-scale histopathology image

Y Shen, J Ke - 2021 IEEE International Conference on Image …, 2021 - ieeexplore.ieee.org
Expensive annotation cost has always been a critical obstacle in deep learning systems, in
particular for the applications requiring domain experts' knowledge, such as medical image …

Cluster image patches with multiple mutual information in unlabelled whole-slide image

Y Shen, Y Lu, Y Luo, J Ke - 2021 IEEE International …, 2021 - ieeexplore.ieee.org
The massive annotation workload has always hindered the progress towards an automatic
analysis of gigapixel whole-slide images. Histologically, individual patches from a …