Over the past two decades, pattern mining techniques have become an integral part of many
bioinformatics solutions. Frequent itemset mining is a popular group of pattern mining …

Establishing an association between variables is always of interest in genomic studies.
Generation of DNA microarray gene expression data introduces a variety of data analysis …

We present GENECODIS, a web-based tool that integrates different sources of information to
search for annotations that frequently co-occur in a set of genes and rank them by statistical …

GeneCodis is a web server application for functional analysis of gene lists that integrates
different sources of information and finds modular patterns of interrelated annotations. This …

Objectives To provide typical examples of biomedical ontologies in action, emphasizing the
role played by biomedical ontologies in knowledge management, data integration and …

Mining matrices to find relevant biclusters, subsets of rows exhibiting a coherent pattern over
a subset of columns, is a critical task for a wide-set of biomedical and social applications …

Background Biclustering, the discovery of sets of objects with a coherent pattern across a
subset of conditions, is a critical task to study a wide-set of biomedical problems, where …

Statistical evaluation of biclustering solutions is essential to guarantee the absence of
spurious relations and to validate the high number of scientific statements inferred from …

Functional enrichment analysis is conducted on high-throughput data to provide functional
interpretation for a list of genes or proteins that share a common property, such as being …

Abstract Knowledge Discovery in Databases is gaining attention and raising new hopes for
traditional Chinese medicine (TCM) researchers. It is a useful tool in understanding and …