Genpip: In-memory acceleration of genome analysis via tight integration of basecalling and read mapping
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …
that can sequence long fragments of a genome into raw electrical signals at low cost …
RawHash: enabling fast and accurate real-time analysis of raw nanopore signals for large genomes
Nanopore sequencers generate electrical raw signals in real-time while sequencing long
genomic strands. These raw signals can be analyzed as they are generated, providing an …
genomic strands. These raw signals can be analyzed as they are generated, providing an …
Challenges and Opportunities for RISC-V Architectures Towards Genomics-Based Workloads
G Gómez-Sánchez, A Call, X Teruel, L Alonso… - … Conference on High …, 2023 - Springer
The use of large-scale supercomputing architectures is a hard requirement for scientific
computing Big-Data applications. An example is genomics analytics, where millions of data …
computing Big-Data applications. An example is genomics analytics, where millions of data …
RISC-V for Genome Data Analysis: Opportunities and Challenges
L López-Villellas, E Pineda-Sánchez… - … 38th Conference on …, 2023 - ieeexplore.ieee.org
The RISC-V ISA has gained significant momentum in High-Performance Computing (HPC)
research and market due to its open-source nature, fostering collaborative research and …
research and market due to its open-source nature, fostering collaborative research and …