Optimizing weighted gene co-expression network analysis with a multi-threaded calculation of the topological overlap matrix

M Shuai, D He, X Chen - Statistical applications in genetics and …, 2021 - degruyter.com
Biomolecular networks are often assumed to be scale-free hierarchical networks. The
weighted gene co-expression network analysis (WGCNA) treats gene co-expression …

cBiT: A transcriptomics database for innovative biomaterial engineering

DGAJ Hebels, A Carlier, MLJ Coonen, DH Theunissen… - Biomaterials, 2017 - Elsevier
Creating biomaterials that are suited for clinical application is still hampered by a lack of
understanding of the interaction between a cell and the biomaterial surface it grows on. This …

Multi-objective optimized fuzzy clustering for detecting cell clusters from single-cell expression profiles

S Mallik, Z Zhao - Genes, 2019 - mdpi.com
Rapid advance in single-cell RNA sequencing (scRNA-seq) allows measurement of the
expression of genes at single-cell resolution in complex disease or tissue. While many …

Type 2 Diabetes Induced by changes in proteomic profiling of zebrafish chronically exposed to a mixture of Organochlorine pesticides at low concentrations

Y Gao, H Lee, S Lee, KT Kim - International Journal of Environmental …, 2022 - mdpi.com
Effect of organochlorine pesticides (OCPs) mixtures on development of type 2 diabetes
mellitus (T2DM) and the underlying mechanism, especially at protein levels, are largely …

A performance of the scattered averaging technique based on the dataset for the cluster center initialization

ABW Putra, AFO Gaffar… - International Journal of …, 2021 - search.proquest.com
Clustering is one of the primary functions in data mining explorations and statistical data
analysis which widely used in various fields. There are two types of the clustering algorithms …

ENQUIRE RECONSTRUCTS AND EXPANDS CONTEXT-SPECIFIC CO-OCCURRENCE NETWORKS FROM BIOMEDICAL LITERATURE

L Musella, X Lai, M Widmann, J Vera - bioRxiv, 2023 - biorxiv.org
The accelerating growth in scientific literature is overwhelming our capacity to manually distil
complex phenomena like molecular networks linked to diseases. Moreover, confirmation …

[HTML][HTML] Unbiased analysis of peripheral blood mononuclear cells reveals CD4 T cell response to RSV matrix protein

J Thakar, Y Qian, L Benoodt, D Roumanes, X Qiu… - Vaccine: X, 2020 - Elsevier
Respiratory syncytial virus (RSV) is the most important cause of respiratory tract illness
especially in young infants that develop severe disease requiring hospitalization, and …

A new brain magnetic resonance imaging segmentation algorithm based on subtractive clustering and fuzzy C-means clustering

W Yan, Y Gelan - Journal of Medical Imaging and Health …, 2018 - ingentaconnect.com
Human brain imaging provides reliable and fast information in clinical diagnosis, and a
precise brain image allows researchers to effectively understand the lesions of the patients …

[PDF][PDF] Optimization of the spatial interpolation based on the sliding neighborhood operation method by using K-Mean Clustering for predicting the topographic shape …

AFO Gaffar, RM Ibayasid, ABW Putra… - International Journal of …, 2019 - academia.edu
The spatial interpolation method estimates the value of the unobserved locations in
geographical space based on the spatial relationship between the position of the unknown …

Dataset transformation using hybrid method of polar-based cartesian and image filtering technique for annual rainfall clustering

B Suprapty, AS Wiguna, A Wajiansyah… - … Seminar on Intelligent …, 2021 - ieeexplore.ieee.org
Clustering is categorized as unsupervised learning because there is no class label
information available in grouping a dataset. For this reason, an assessment of the quality of …