Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective
D Chowdhury - Physics Reports, 2013 - Elsevier
A molecular motor is made of either a single macromolecule or a macromolecular complex.
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …
A review of different models derived from classical Kolmogorov, Johnson and Mehl, and Avrami (KJMA) theory to recover physical meaning in solid‐state …
JS Blázquez, FJ Romero, CF Conde… - physica status solidi …, 2022 - Wiley Online Library
The classical theory of solid‐state transformation based on nucleation and growth
processes, developed by Kolmogorov, Johnson and Mehl, and Avrami (KJMA theory), is …
processes, developed by Kolmogorov, Johnson and Mehl, and Avrami (KJMA theory), is …
A chromatin structure‐based model accurately predicts DNA replication timing in human cells
Y Gindin, MS Valenzuela, MI Aladjem… - Molecular systems …, 2014 - embopress.org
The metazoan genome is replicated in precise cell lineage‐specific temporal order.
However, the mechanism controlling this orchestrated process is poorly understood as no …
However, the mechanism controlling this orchestrated process is poorly understood as no …
Human genome replication proceeds through four chromatin states
H Julienne, A Zoufir, B Audit… - PLoS computational …, 2013 - journals.plos.org
Advances in genomic studies have led to significant progress in understanding the
epigenetically controlled interplay between chromatin structure and nuclear functions …
epigenetically controlled interplay between chromatin structure and nuclear functions …
On the interplay of the DNA replication program and the intra-S phase checkpoint pathway
DNA replication in eukaryotes is achieved by the activation of multiple replication origins
which needs to be precisely coordinated in space and time. This spatio-temporal replication …
which needs to be precisely coordinated in space and time. This spatio-temporal replication …
Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm
In this protocol, we describe the use of the LastWave open-source signal-processing
command language (http://perso. ens-lyon. fr/benjamin. audit/LastWave/) for analyzing …
command language (http://perso. ens-lyon. fr/benjamin. audit/LastWave/) for analyzing …
[HTML][HTML] Structural organization of human replication timing domains
Recent analysis of genome-wide epigenetic modification data, mean replication timing
(MRT) profiles and chromosome conformation data in mammals have provided increasing …
(MRT) profiles and chromosome conformation data in mammals have provided increasing …
Genome replication in asynchronously growing microbial populations
Biological cells replicate their genomes in a well-planned manner. The DNA replication
program of an organism determines the timing at which different genomic regions are …
program of an organism determines the timing at which different genomic regions are …
Stochasticity of replication forks' speeds plays a key role in the dynamics of DNA replication
Eukaryotic DNA replication is elaborately orchestrated to duplicate the genome timely and
faithfully. Replication initiates at multiple origins from which replication forks emanate and …
faithfully. Replication initiates at multiple origins from which replication forks emanate and …
Cell-to-cell variability and robustness in S-phase duration from genome replication kinetics
Q Zhang, F Bassetti, M Gherardi… - Nucleic acids …, 2017 - academic.oup.com
Genome replication, a key process for a cell, relies on stochastic initiation by replication
origins, causing a variability of replication timing from cell to cell. While stochastic models of …
origins, causing a variability of replication timing from cell to cell. While stochastic models of …