Fungal identification using molecular tools: a primer for the natural products research community

HA Raja, AN Miller, CJ Pearce… - Journal of natural …, 2017 - ACS Publications
Fungi are morphologically, ecologically, metabolically, and phylogenetically diverse. They
are known to produce numerous bioactive molecules, which makes them very useful for …

Integrative approaches for species delimitation in Ascomycota

SSN Maharachchikumbura, Y Chen, HA Ariyawansa… - Fungal Diversity, 2021 - Springer
Biodiversity loss from disturbances caused by human activities means that species are
disappearing at an ever increasing rate. The high number of species that have yet to be …

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

CL Schoch, KA Seifert, S Huhndorf… - Proceedings of the …, 2012 - National Acad Sciences
Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest
kingdom of eukaryotic life, by a multinational, multilaboratory consortium. The region of the …

One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes

JB Stielow, CA Levesque, KA Seifert… - … and Evolution of …, 2015 - ingentaconnect.com
The aim of this study was to assess potential candidate gene regions and corresponding
universal primer pairs as secondary DNA barcodes for the fungal kingdom, additional to ITS …

[HTML][HTML] The Colletotrichum gloeosporioides species complex

BS Weir, PR Johnston, U Damm - Studies in mycology, 2012 - Elsevier
The limit of the Colletotrichum gloeosporioides species complex is defined genetically,
based on a strongly supported clade within the Colletotrichum ITS gene tree. All taxa …

Colletotrichum: current status and future directions

PF Cannon, U Damm, PR Johnston… - Studies in …, 2012 - ingentaconnect.com
A review is provided of the current state of understanding of Colletotrichum systematics,
focusing on species-level data and the major clades. The taxonomic placement of the genus …

[HTML][HTML] PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

N Segata, D Börnigen, XC Morgan… - Nature …, 2013 - nature.com
New microbial genomes are constantly being sequenced, and it is crucial to accurately
determine their taxonomic identities and evolutionary relationships. Here we report …

[HTML][HTML] Food fermentations: microorganisms with technological beneficial use

F Bourdichon, S Casaregola, C Farrokh… - International journal of …, 2012 - Elsevier
Microbial food cultures have directly or indirectly come under various regulatory frameworks
in the course of the last decades. Several of those regulatory frameworks put emphasis on …

[HTML][HTML] Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

J Amselem, CA Cuomo, JAL van Kan, M Viaud… - PLoS …, 2011 - journals.plos.org
Sclerotinia sclerotiorum and Botrytis cinerea are closely related necrotrophic plant
pathogenic fungi notable for their wide host ranges and environmental persistence. These …

What is a species in fungal plant pathogens?

RS Jayawardena, KD Hyde, ARG de Farias… - Fungal Diversity, 2021 - Springer
Scientific names are crucial for communicating knowledge concerning fungi and fungus-like
organisms. In plant pathology, they link information regarding biology, host range …