Genomic consequences associated with Agrobacterium‐mediated transformation of plants

G Thomson, L Dickinson, Y Jacob - The Plant Journal, 2024 - Wiley Online Library
Attenuated strains of the naturally occurring plant pathogen Agrobacterium tumefaciens can
transfer virtually any DNA sequence of interest to model plants and crops. This has made …

Microhomology-Mediated End Joining Chronicles: Tracing the Evolutionary Footprints of Genome Protection

A Sfeir, M Tijsterman, M McVey - Annual Review of Cell and …, 2024 - annualreviews.org
The fidelity of genetic information is essential for cellular function and viability. DNA double-
strand breaks (DSBs) pose a significant threat to genome integrity, necessitating efficient …

[HTML][HTML] The APE2 nuclease is essential for DNA double-strand break repair by microhomology-mediated end joining

H Fleury, MK MacEachern, CM Stiefel, R Anand… - Molecular cell, 2023 - cell.com
Microhomology-mediated end joining (MMEJ) is an intrinsically mutagenic pathway of DNA
double-strand break (DSB) repair essential for proliferation of homologous recombination …

Discovery of a small-molecule inhibitor that traps Polθ on DNA and synergizes with PARP inhibitors

W Fried, M Tyagi, L Minakhin, G Chandramouly… - Nature …, 2024 - nature.com
The DNA damage response (DDR) protein DNA Polymerase θ (Polθ) is synthetic lethal with
homologous recombination (HR) factors and is therefore a promising drug target in …

Structure and mechanism in non-homologous end joining

A Vogt, Y He - DNA repair, 2023 - Elsevier
DNA double-stranded breaks (DSBs) are a particularly challenging form of DNA damage to
repair because the damaged DNA must not only undergo the chemical reactions …

ATM and 53BP1 regulate alternative end joining–mediated V (D) J recombination

J Wang, CA Sadeghi, LV Le, M Le Bouteiller… - Science …, 2024 - science.org
G0-G1 phase alternative end joining (A-EJ) is a recently defined mutagenic pathway
characterized by resected deletion and translocation joints that are predominantly direct and …

Replication stress induces POLQ-mediated structural variant formation throughout common fragile sites after entry into mitosis

TE Wilson, S Ahmed, A Winningham… - Nature …, 2024 - nature.com
Genomic structural variants (SVs) greatly impact human health, but much is unknown about
the mechanisms that generate the largest class of nonrecurrent alterations. Common fragile …

GLI1 confers resistance to PARP inhibitors by activating the DNA damage repair pathway

H Ikeuchi, Y Matsuno, R Kusumoto-Matsuo, S Kojima… - Oncogene, 2024 - nature.com
Identifying the mechanisms of action of anticancer drugs is an important step in the
development of new drugs. In this study, we established a comprehensive screening …

The flexible and iterative steps within the NHEJ pathway

G Watanabe, MR Lieber - Progress in Biophysics and Molecular Biology, 2023 - Elsevier
Cellular and biochemical studies of nonhomologous DNA end joining (NHEJ) have long
established that nuclease and polymerase action are necessary for the repair of a very large …

The Mechanism, Regulation and Evolution of V (D) J Recombination

DG Schatz, Y Zhang, J Xiao, S Zha, Y Zhang… - Molecular Biology of B …, 2024 - Elsevier
During lymphocyte development, diverse primary repertoires of antigen receptors are
created by V (D) J recombination. In the first phase of the V (D) J recombination reaction …