Subclonal reconstruction from bulk tumor DNA sequencing has become a pillar of cancer evolution studies, providing insight into the clonality and relative ordering of mutations and …
Abstract We describe Strelka2 (https://github. com/Illumina/strelka), an open-source small- variant-calling method for research and clinical germline and somatic sequencing …
Current therapies for medulloblastoma, a highly malignant childhood brain tumour, impose debilitating effects on the developing child, and highlight the need for molecularly targeted …
Single-cell RNA sequencing (scRNA-seq) is the leading technique for characterizing the transcriptomes of individual cells in a sample. The latest protocols are scalable to thousands …
H Nakagawa, M Fujita - Cancer science, 2018 - Wiley Online Library
Explosive advances in next‐generation sequencer (NGS) and computational analyses have enabled exploration of somatic protein‐altered mutations in most cancer types, with coding …
Distilling biologically meaningful information from cancer genome sequencing data requires comprehensive identification of somatic alterations using rigorous computational methods …
Cancer immunogenomics is an emerging field that bridges genomics and immunology. The establishment of large-scale genomic collaborative efforts along with the development of …
BC Worst, CM van Tilburg, GP Balasubramanian… - European journal of …, 2016 - Elsevier
Abstract The 'Individualized Therapy for Relapsed Malignancies in Childhood'(INFORM) precision medicine study is a nationwide German program for children with high-risk …
Briefings in bioinformatics, 2018 - academic.oup.com
Many disciplines, from human genetics and oncology to plant breeding, microbiology and virology, commonly face the challenge of analyzing rapidly increasing numbers of genomes …