Therapeutic cancer vaccines

M Saxena, SH van der Burg, CJM Melief… - Nature Reviews …, 2021 - nature.com
Therapeutic cancer vaccines have undergone a resurgence in the past decade. A better
understanding of the breadth of tumour-associated antigens, the native immune response …

A practical guide to cancer subclonal reconstruction from DNA sequencing

M Tarabichi, A Salcedo, AG Deshwar… - Nature …, 2021 - nature.com
Subclonal reconstruction from bulk tumor DNA sequencing has become a pillar of cancer
evolution studies, providing insight into the clonality and relative ordering of mutations and …

Strelka2: fast and accurate calling of germline and somatic variants

S Kim, K Scheffler, AL Halpern, MA Bekritsky, E Noh… - Nature …, 2018 - nature.com
Abstract We describe Strelka2 (https://github. com/Illumina/strelka), an open-source small-
variant-calling method for research and clinical germline and somatic sequencing …

The whole-genome landscape of medulloblastoma subtypes

PA Northcott, I Buchhalter, AS Morrissy, V Hovestadt… - Nature, 2017 - nature.com
Current therapies for medulloblastoma, a highly malignant childhood brain tumour, impose
debilitating effects on the developing child, and highlight the need for molecularly targeted …

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

E Mereu, A Lafzi, C Moutinho, C Ziegenhain… - Nature …, 2020 - nature.com
Single-cell RNA sequencing (scRNA-seq) is the leading technique for characterizing the
transcriptomes of individual cells in a sample. The latest protocols are scalable to thousands …

Whole genome sequencing analysis for cancer genomics and precision medicine

H Nakagawa, M Fujita - Cancer science, 2018 - Wiley Online Library
Explosive advances in next‐generation sequencer (NGS) and computational analyses have
enabled exploration of somatic protein‐altered mutations in most cancer types, with coding …

Computational analysis of cancer genome sequencing data

I Cortés-Ciriano, DC Gulhan, JJK Lee… - Nature Reviews …, 2022 - nature.com
Distilling biologically meaningful information from cancer genome sequencing data requires
comprehensive identification of somatic alterations using rigorous computational methods …

Computational immunogenomic approaches to predict response to cancer immunotherapies

V Addala, F Newell, JV Pearson, A Redwood… - Nature Reviews …, 2024 - nature.com
Cancer immunogenomics is an emerging field that bridges genomics and immunology. The
establishment of large-scale genomic collaborative efforts along with the development of …

[HTML][HTML] Next-generation personalised medicine for high-risk paediatric cancer patients–The INFORM pilot study

BC Worst, CM van Tilburg, GP Balasubramanian… - European journal of …, 2016 - Elsevier
Abstract The 'Individualized Therapy for Relapsed Malignancies in Childhood'(INFORM)
precision medicine study is a nationwide German program for children with high-risk …

[PDF][PDF] Computational pan-genomics: status, promises and challenges

Briefings in bioinformatics, 2018 - academic.oup.com
Many disciplines, from human genetics and oncology to plant breeding, microbiology and
virology, commonly face the challenge of analyzing rapidly increasing numbers of genomes …