Transcription factors: Bridge between cell signaling and gene regulation

P Weidemüller, M Kholmatov, E Petsalaki… - …, 2021 - Wiley Online Library
Transcription factors (TFs) are key regulators of intrinsic cellular processes, such as
differentiation and development, and of the cellular response to external perturbation …

Redox proteomics: chemical principles, methodological approaches and biological/biomedical promises

A Bachi, I Dalle-Donne, A Scaloni - Chemical reviews, 2013 - ACS Publications
Inevitable byproducts of aerobic metabolism are free radicals and other highly reactive
oxidants and nitrosants that are continuously formed within cells. Most cells generally …

Posttranslational protein modifications in plant metabolism

G Friso, KJ van Wijk - Plant physiology, 2015 - academic.oup.com
Posttranslational modifications (PTM s) of proteins greatly expand proteome diversity,
increase functionality, and allow for rapid responses, all at relatively low costs for the cell …

An interactive database for the assessment of histone antibody specificity

SB Rothbart, BM Dickson, JR Raab, AT Grzybowski… - Molecular cell, 2015 - cell.com
Access to high-quality antibodies is a necessity for the study of histones and their
posttranslational modifications (PTMs). Here we debut the Histone Antibody Specificity …

Allosteric post-translational modification codes

R Nussinov, CJ Tsai, F Xin, P Radivojac - Trends in biochemical sciences, 2012 - cell.com
Post-translational modifications (PTMs) have been recognized to impact protein function in
two ways:(i) orthosterically, via direct recognition by protein domains or through interference …

Breaking the histone code with quantitative mass spectrometry

LMP Britton, M Gonzales-Cope, BM Zee… - Expert review of …, 2011 - Taylor & Francis
Histone post-translational modifications (PTMs) comprise one of the most intricate nuclear
signaling networks that govern gene expression in a long-term and dynamic fashion. These …

Integrating mass spectrometry of intact protein complexes into structural proteomics

SJ Hyung, BT Ruotolo - Proteomics, 2012 - Wiley Online Library
MS analysis of intact protein complexes has emerged as an established technology for
assessing the composition and connectivity within dynamic, heterogeneous multiprotein …

Tools for analyzing the phosphoproteome and other phosphorylated biomolecules: a review

A Leitner, M Sturm, W Lindner - Analytica chimica acta, 2011 - Elsevier
Enrichment, separation and mass spectrometric analysis of biomolecules carrying a
phosphate group plays an important role in current analytical chemistry. Application areas …

Site-specific NMR mapping and time-resolved monitoring of serine and threonine phosphorylation in reconstituted kinase reactions and mammalian cell extracts

FX Theillet, HM Rose, S Liokatis, A Binolfi… - Nature protocols, 2013 - nature.com
We outline NMR protocols for site-specific mapping and time-resolved monitoring of protein
phosphorylation reactions using purified kinases and mammalian cell extracts. These …

Hitting the 'mark': interpreting lysine methylation in the context of active transcription

GG Wozniak, BD Strahl - Biochimica Et Biophysica Acta (BBA)-Gene …, 2014 - Elsevier
Histones and their posttranslational modifications (PTMs) play an important role in
regulating DNA-templated processes. While some PTMs directly modulate chromatin …