Barley landraces are characterized by geographically heterogeneous genomic origins

AM Poets, Z Fang, MT Clegg, PL Morrell - Genome biology, 2015 - Springer
Background The genetic provenance of domesticated plants and the routes along which
they were disseminated in prehistory have been a long-standing source of debate. Much of …

Assessing genomic selection prediction accuracy in a dynamic barley breeding population

AH Sallam, JB Endelman, JL Jannink… - The Plant …, 2015 - Wiley Online Library
Prediction accuracy of genomic selection (GS) has been previously evaluated through
simulation and cross‐validation; however, validation based on progeny performance in a …

PopVar: A genome‐wide procedure for predicting genetic variance and correlated response in biparental breeding populations

M Mohammadi, T Tiede, KP Smith - Crop Science, 2015 - Wiley Online Library
Predicting genetic variances of biparental populations has been a long‐standing goal for
plant breeders. The ability to discriminate among crosses with similarly predicted high …

Development and genetic characterization of an advanced backcross-nested association mapping (AB-NAM) population of wild× cultivated barley

LM Nice, BJ Steffenson, GL Brown-Guedira… - Genetics, 2016 - academic.oup.com
The ability to access alleles from unadapted germplasm collections is a long-standing
problem for geneticists and breeders. Here we developed, characterized, and demonstrated …

Two genomic regions contribute disproportionately to geographic differentiation in wild barley

Z Fang, AM Gonzales, MT Clegg… - G3: Genes …, 2014 - academic.oup.com
Genetic differentiation in natural populations is driven by geographic distance and by
ecological or physical features within and between natural habitats that reduce migration …

The fate of deleterious variants in a barley genomic prediction population

TJY Kono, C Liu, EE Vonderharr, D Koenig, JC Fay… - Genetics, 2019 - academic.oup.com
Targeted identification and purging of deleterious genetic variants has been proposed as a
novel approach to animal and plant breeding. This strategy is motivated, in part, by the …

Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley

K Takahagi, Y Uehara-Yamaguchi, T Yoshida… - Scientific reports, 2016 - nature.com
Barley is one of the founder crops of Old world agriculture and has become the fourth most
important cereal worldwide. Information on genome-scale DNA polymorphisms allows …

The effects of both recent and long-term selection and genetic drift are readily evident in North American barley breeding populations

AM Poets, M Mohammadi, K Seth… - G3: Genes …, 2016 - academic.oup.com
Barley was introduced to North America∼ 400 yr ago but adaptation to modern production
environments is more recent. Comparisons of allele frequencies among growth habits and …

SNPM eta: SNP annotation and SNP metadata collection without a reference genome

TJY Kono, K Seth, JA Poland… - Molecular ecology …, 2014 - Wiley Online Library
The increase in availability of resequencing data is greatly accelerating SNP discovery and
has facilitated the development of SNP genotyping assays. This, in turn, is increasing …

Phenotypically wild barley shows evidence of introgression from cultivated barley

C Liu, L Lei, M Shao, JD Franckowiak, JB Pacheco… - bioRxiv, 2024 - biorxiv.org
Plant conservation hinges on preserving biodiversity, which is crucial for long-term
adaptation. Multiple studies have reported genetic evidence of crop-to-wild introgression in …