Statistical and dynamical properties of topological polymers with graphs and ring polymers with knots

T Deguchi, E Uehara - Polymers, 2017 - mdpi.com
We review recent theoretical studies on the statistical and dynamical properties of polymers
with nontrivial structures in chemical connectivity and those of polymers with a nontrivial …

Thermal properties of knotted block copolymer rings with charged monomers subjected to short-range interactions

NA Taklimi, F Ferrari, MR Piątek, L Tubiana - Physical Review E, 2023 - APS
The thermal properties of coarse-grained knotted copolymer rings fluctuating in a highly
screening solution are investigated on a simple cubic lattice using the Wang-Landau Monte …

Pathways of DNA unlinking: a story of stepwise simplification

R Stolz, M Yoshida, R Brasher, M Flanner, K Ishihara… - Scientific reports, 2017 - nature.com
In Escherichia coli DNA replication yields interlinked chromosomes. Controlling topological
changes associated with replication and returning the newly replicated chromosomes to an …

[图书][B] Encyclopedia of knot theory

C Adams, E Flapan, A Henrich, LH Kauffman… - 2021 - api.taylorfrancis.com
" Knot theory is a fascinating mathematical subject, with multiple links to theoretical physics.
This enyclopedia is filled with valuable information on a rich and fascinating subject."–Ed …

Computational Exploration of Multistable Elastic Knots

M Vidulis, Y Ren, J Panetta, E Grinspun… - ACM Transactions on …, 2023 - infoscience.epfl.ch
We present an algorithmic approach to discover, study, and design multistable elastic knots.
Elastic knots are physical realizations of closed curves embedded in 3-space. When …

New biologically motivated knot table

R Brasher, RG Scharein… - Biochemical Society …, 2013 - portlandpress.com
The knot nomenclature in common use, summarized in Rolfsen's knot table [Rolfsen (1990)
Knots and Links, American Mathematical Society], was not originally designed to distinguish …

The ropelength of complex knots

AR Klotz, M Maldonado - Journal of Physics A: Mathematical and …, 2021 - iopscience.iop.org
The ropelength of a knot is the minimum contour length of a tube of unit radius that traces out
the knot in three dimensional space without self-overlap, colloquially the minimum amount of …

Properties of knotted ring polymers. I. Equilibrium dimensions

ML Mansfield, JF Douglas - The Journal of chemical physics, 2010 - pubs.aip.org
We report calculations on three classes of knotted ring polymers:(1) simple-cubic lattice self-
avoiding rings (SARs),(2)“true” theta-state rings, ie, SARs generated on the simple-cubic …

On the mean and variance of the writhe of random polygons

J Portillo, Y Diao, R Scharein, J Arsuaga… - Journal of Physics A …, 2011 - iopscience.iop.org
We here address two problems concerning the writhe of random polygons. First, we study
the behavior of the mean writhe as a function length. Second, we study the variance of the …

On the universality of knot probability ratios

EJJ Van Rensburg, A Rechnitzer - Journal of Physics A …, 2011 - iopscience.iop.org
Let pn denote the number of self-avoiding polygons of length n on a regular three-
dimensional lattice, and let pn (K) be the number which have knot type K. The probability …