A pan-grass transcriptome reveals patterns of cellular divergence in crops

B Guillotin, R Rahni, M Passalacqua, MA Mohammed… - Nature, 2023 - nature.com
Different plant species within the grasses were parallel targets of domestication, giving rise
to crops with distinct evolutionary histories and traits. Key traits that distinguish these species …

Intertwined evolution of plant epigenomes and genomes

EJ Ritter, CE Niederhuth - Current Opinion in Plant Biology, 2021 - Elsevier
DNA methylation is found across eukaryotes; however, plants have evolved patterns and
pathways of DNA methylation that are distinct from animals and fungi. DNA methylation …

Divergent DNA methylation contributes to duplicated gene evolution and chilling response in tea plants

W Tong, R Li, J Huang, H Zhao, R Ge, Q Wu… - The Plant …, 2021 - Wiley Online Library
The tea plant (Camellia sinensis) is a thermophilic cash crop and contains a highly
duplicated and repeat‐rich genome. It is still unclear how DNA methylation regulates the …

Epigenomic divergence correlates with sequence polymorphism in Arabidopsis paralogs

SK Kenchanmane Raju, M Lensink… - New …, 2023 - Wiley Online Library
Processes affecting rates of sequence polymorphism are fundamental to the evolution of
gene duplicates. The relationship between gene activity and sequence polymorphism can …

Epigenetic diversity of genes with copy number variations among natural populations of the three‐spined stickleback

FJJ Chain, BS Meyer, MJ Heckwolf… - Evolutionary …, 2024 - Wiley Online Library
Duplicated genes provide the opportunity for evolutionary novelty and adaptive divergence.
In many cases, having more gene copies increases gene expression, which might facilitate …

Genome-wide identification and expression analysis of protein arginine methyltransferase and JmjC domain-containing family in apple

S Su, M Ji, J Chen, M Zhang, X Xu… - Frontiers in Plant …, 2024 - frontiersin.org
Histone methylation is an important type of histone modification that regulates gene
expression in plants. In this study, we identified 14 arginine methylation-related genes …

doubletrouble: an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

F Almeida-Silva, Y Van de Peer - bioRxiv, 2024 - biorxiv.org
Gene and genome duplications are major evolutionary forces that shape the diversity and
complexity of life. However, different duplication modes have distinct impacts on gene …

CRISPR/Cas9 knockout of EPFL10 reduces stomatal density while maintaining photosynthesis and enhancing water conservation in rice

NG Karavolias, D Patel, K Seong, M Tjahjadi… - bioRxiv, 2021 - biorxiv.org
Rice production is of paramount importance for global nutrition and potential yields will be
detrimentally affected by climate change. Rice stomatal developmental genetics were …

Epigenomic divergence underlies sequence polymorphism and the evolutionary fate of duplicate paralogs in A. thaliana

SK Kenchanmane Raju, M Lensink, DJ Kliebenstein… - bioRxiv, 2023 - biorxiv.org
Processes affecting rates of sequence polymorphism are fundamental to molecular
evolution and the evolutionary fate of gene duplicates. The relationship between gene …

Comprendre la paleo-évolution des plantes à fleurs pour les enjeux de l'Agriculture moderne

C Siguret - 2023 - theses.hal.science
Les plantes à fleurs, également connues sous le nom d'Angiospermes, ont évolué il y a plus
de 300 millions d'années, se diversifiant et colonisant la plupart des habitats terrestres pour …