Knowing where and how criminal organizations operate using web content

M Coscia, V Rios - Proceedings of the 21st ACM international …, 2012 - dl.acm.org
We develop a framework that uses Web content to obtain quantitative information about a
phenomenon that would otherwise require the operation of large scale, expensive …

TBGA: a large-scale gene-disease association dataset for biomedical relation extraction

S Marchesin, G Silvello - BMC bioinformatics, 2022 - Springer
Background Databases are fundamental to advance biomedical science. However, most of
them are populated and updated with a great deal of human effort. Biomedical Relation …

XGDAG: explainable gene–disease associations via graph neural networks

A Mastropietro, G De Carlo, A Anagnostopoulos - Bioinformatics, 2023 - academic.oup.com
Motivation Disease gene prioritization consists in identifying genes that are likely to be
involved in the mechanisms of a given disease, providing a ranking of such genes. Recently …

NIAPU: network-informed adaptive positive-unlabeled learning for disease gene identification

P Stolfi, A Mastropietro, G Pasculli, P Tieri… - …, 2023 - academic.oup.com
Motivation Gene–disease associations are fundamental for understanding disease etiology
and developing effective interventions and treatments. Identifying genes not yet associated …

Building a large gene expression-cancer knowledge base with limited human annotations

S Marchesin, L Menotti, F Giachelle, G Silvello… - Database, 2023 - academic.oup.com
Cancer prevention is one of the most pressing challenges that public health needs to face. In
this regard, data-driven research is central to assist medical solutions targeting cancer. To …

[PDF][PDF] On the importance of cellular composition in human brain transcriptomics

G Sutton - 2022 - unsworks.unsw.edu.au
In mammals, the brain serves as the centralised control and processor of information.
Humans boast a proportionally larger and more-developed brain, hypothesised to underlie …

Opera-oriented character relations extraction for role interaction and behaviour Understanding: a deep learning approach

X Dai, X Zhao, P Jin, X Cai, H Zhang… - Behaviour & …, 2019 - Taylor & Francis
There are a great number of complex relations among different characters in an opera.
Retrieving such relations is crucial for performers and audience to accurately understand the …

Toward explainable biomedical deep learning

A Mastropietro - 2024 - iris.uniroma1.it
Deep learning has been extensively utilized in the domains of bioinformatics and
chemoinformatics, yielding compelling results. However, neural networks have …

[PDF][PDF] Bootstrapping Gene Expression-Cancer Knowledge Bases with Limited Human Annotations

S Marchesin, L Menotti, F Giachelle, G Silvello… - 2024 - dei.unipd.it
Abstract We introduce the Collaborative Oriented Relation Extraction (CORE) system for
Knowledge Base Construction, based on the combination of Relation Extraction (RE) …

Text and data mining meets the pharmaceutical industry: Markus bundschus speaks

S Hardin - Bulletin of the Association for Information Science …, 2017 - Wiley Online Library
EDITOR'S SUMMARY Text and data mining have proven to greatly impact the world of
biomedical research, especially for Roche Diagnostics in Penzberg, Germany. Taking …