Allosteric Modulation of Adenosine A2A Receptors as a New Therapeutic Avenue

M Korkutata, L Agrawal, M Lazarus - International Journal of Molecular …, 2022 - mdpi.com
The therapeutic potential of targeting adenosine A2A receptors (A2ARs) is immense due to
their broad expression in the body and central nervous system. The role of A2ARs in …

Molecular simulations of proteins: From simplified physical interactions to complex biological phenomena

B Rizzuti - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2022 - Elsevier
Molecular dynamics simulation is the most popular computational technique for investigating
the structural and dynamical behaviour of proteins, in search of the molecular basis of their …

Comprehensive virtual screening of 4.8 k flavonoids reveals novel insights into allosteric inhibition of SARS-CoV-2 MPRO

G Jiménez-Avalos, AP Vargas-Ruiz… - Scientific reports, 2021 - nature.com
SARS-CoV-2 main protease is a common target for inhibition assays due to its high
conservation among coronaviruses. Since flavonoids show antiviral activity, several in silico …

The PIWI-specific insertion module helps load longer piRNAs for translational activation essential for male fertility

X Wang, DH Lin, Y Yan, AH Wang, J Liao… - Science China Life …, 2023 - Springer
PIWI-clade proteins harness piRNAs of 24–33 nt in length. Of great puzzles are how PIWI-
clade proteins incorporate piRNAs of different sizes and whether the size matters to …

In silico ligand docking approaches to characterise the binding of known allosteric modulators to the glucagon-like peptide 1 receptor and prediction of ADME/Tox …

CS Odoemelam, E Hunter, J Simms, Z Ahmad… - Applied …, 2022 - mdpi.com
The glucagon-like peptide 1 receptor (GLP-1R) is a member of the family (or class) B G-
protein-coupled receptor (GPCR). The receptor is a regulator of insulin and a key target in …

Computational investigations on the binding mode of ligands for the cannabinoid-activated G protein-coupled receptor GPR18

A Neumann, V Engel, AB Mahardhika, CT Schoeder… - Biomolecules, 2020 - mdpi.com
GPR18 is an orphan G protein-coupled receptor (GPCR) expressed in cells of the immune
system. It is activated by the cannabinoid receptor (CB) agonist∆ 9-tetrahydrocannabinol …

An in-silico layer-by-layer adsorption study of the interaction between Rebaudioside A and the T1R2 human sweet taste receptor: modelling and biosensing …

OA Arodola, S Kanchi, P Hloma, K Bisetty, AM Asiri… - Scientific Reports, 2020 - nature.com
The human sweet taste receptor (T1R2) monomer—a member of the G-protein coupled
receptor family that detects a wide variety of chemically and structurally diverse sweet tasting …

Molecular mechanism for attractant signaling to DHMA by E. coli Tsr

AA Orr, J Yang, N Sule, R Chawla, KG Hull, M Zhu… - Biophysical …, 2020 - cell.com
The attractant chemotaxis response of Escherichia coli to norepinephrine requires that it be
converted to 3, 4-dihydroxymandelic acid (DHMA) by the monoamine oxidase TynA and the …

Atomistic insight into the luminal allosteric regulation of vesicular glutamate transporter 2 by chloride and protons: An all‐atom molecular dynamics simulation study

K Rostamipour, R Talandashti… - … Structure, Function, and …, 2022 - Wiley Online Library
Vesicular glutamate transporters (VGLUTs) are essential components of synaptic
transmission in the brain. Synaptic vesicles' luminal chloride and low pH regulate VGLUTs …

Mechanical Allosteric Couplings of Redox-Induced Conformational Changes in Respiratory Complex I

P Wang, I Leontyev… - The Journal of Physical …, 2022 - ACS Publications
We apply linear response theory to calculate mechanical allosteric couplings in respiratory
complex I between the iron sulfur cluster N2, located in the catalytic cavity, and the …