Polyploidy: an evolutionary and ecological force in stressful times

Y Van de Peer, TL Ashman, PS Soltis, DE Soltis - The Plant Cell, 2021 - academic.oup.com
Polyploidy has been hypothesized to be both an evolutionary dead-end and a source for
evolutionary innovation and species diversification. Although polyploid organisms …

Tomato fruit development and metabolism

M Quinet, T Angosto, FJ Yuste-Lisbona… - Frontiers in plant …, 2019 - frontiersin.org
Tomato (Solanum lycopersicum L.) belongs to the Solanaceae family and is the second
most important fruit or vegetable crop next to potato (Solanum tuberosum L.). It is cultivated …

Genome evolution and diversity of wild and cultivated potatoes

D Tang, Y Jia, J Zhang, H Li, L Cheng, P Wang, Z Bao… - Nature, 2022 - nature.com
Potato (Solanum tuberosum L.) is the world's most important non-cereal food crop, and the
vast majority of commercially grown cultivars are highly heterozygous tetraploids. Advances …

Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species

N Li, Q He, J Wang, B Wang, J Zhao, S Huang… - Nature Genetics, 2023 - nature.com
Effective utilization of wild relatives is key to overcoming challenges in genetic improvement
of cultivated tomato, which has a narrow genetic basis; however, current efforts to decipher …

Major impacts of widespread structural variation on gene expression and crop improvement in tomato

M Alonge, X Wang, M Benoit, S Soyk, L Pereira… - Cell, 2020 - cell.com
Structural variants (SVs) underlie important crop improvement and domestication traits.
However, resolving the extent, diversity, and quantitative impact of SVs has been …

One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

Solanum americanum genome-assisted discovery of immune receptors that detect potato late blight pathogen effectors

X Lin, Y Jia, R Heal, M Prokchorchik… - Nature Genetics, 2023 - nature.com
Potato (Solanum tuberosum) and tomato (Solanum lycopersicon) crops suffer severe losses
to late blight caused by the oomycete pathogen Phytophthora infestans. Solanum …

A reference genome for pea provides insight into legume genome evolution

J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie… - Nature …, 2019 - nature.com
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …

The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor

L Gao, I Gonda, H Sun, Q Ma, K Bao, DM Tieman… - Nature …, 2019 - nature.com
Modern tomatoes have narrow genetic diversity limiting their improvement potential. We
present a tomato pan-genome constructed using genome sequences of 725 …

De novo domestication of wild tomato using genome editing

A Zsögön, T Čermák, ER Naves, MM Notini… - Nature …, 2018 - nature.com
Breeding of crops over millennia for yield and productivity has led to reduced genetic
diversity. As a result, beneficial traits of wild species, such as disease resistance and stress …