Regulatory variants: from detection to predicting impact

E Rojano, P Seoane, JAG Ranea… - Briefings in …, 2019 - academic.oup.com
Variants within non-coding genomic regions can greatly affect disease. In recent years,
increasing focus has been given to these variants, and how they can alter regulatory …

The UCSC genome browser database: 2021 update

J Navarro Gonzalez, AS Zweig, ML Speir… - Nucleic acids …, 2021 - academic.oup.com
For more than two decades, the UCSC Genome Browser database (https://genome. ucsc.
edu) has provided high-quality genomics data visualization and genome annotations to the …

GeneHancer: genome-wide integration of enhancers and target genes in GeneCards

S Fishilevich, R Nudel, N Rappaport, R Hadar… - Database, 2017 - academic.oup.com
A major challenge in understanding gene regulation is the unequivocal identification of
enhancer elements and uncovering their connections to genes. We present GeneHancer, a …

Evolution of diverse strategies for promoter regulation

V Brázda, M Bartas, RP Bowater - Trends in Genetics, 2021 - cell.com
DNA is fundamentally important for all cellular organisms due to its role as a store of
hereditary genetic information. The precise and accurate regulation of gene transcription …

HPV infection alters vaginal microbiome through down-regulating host mucosal innate peptides used by Lactobacilli as amino acid sources

A Lebeau, D Bruyere, P Roncarati, P Peixoto… - Nature …, 2022 - nature.com
Despite the high prevalence of both cervico-vaginal human papillomavirus (HPV) infection
and bacterial vaginosis (BV) worldwide, their causal relationship remains unclear. While BV …

The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms

R Dreos, G Ambrosini, R Groux… - Nucleic acids …, 2017 - academic.oup.com
We present an update of the Eukaryotic Promoter Database EPD (http://epd. vital-it. ch),
more specifically on the EPDnew division, which contains comprehensive organisms …

A concerted neuron–astrocyte program declines in ageing and schizophrenia

E Ling, J Nemesh, M Goldman, N Kamitaki, N Reed… - Nature, 2024 - nature.com
Human brains vary across people and over time; such variation is not yet understood in
cellular terms. Here we describe a relationship between people's cortical neurons and …

Human OPRM1 and murine Oprm1 promoter driven viral constructs for genetic access to μ-opioidergic cell types

GJ Salimando, S Tremblay, BA Kimmey, J Li… - Nature …, 2023 - nature.com
With concurrent global epidemics of chronic pain and opioid use disorders, there is a critical
need to identify, target and manipulate specific cell populations expressing the mu-opioid …

A spatial vascular transcriptomic, proteomic, and phosphoproteomic atlas unveils an angiocrine Tie–Wnt signaling axis in the liver

D Inverso, J Shi, KH Lee, M Jakab, S Ben-Moshe… - Developmental cell, 2021 - cell.com
Single-cell transcriptomics (scRNA-seq) has revolutionized the understanding of the spatial
architecture of tissue structure and function. Advancing the" transcript-centric" view of scRNA …

Farnesoid X receptor activation by bile acids suppresses lipid peroxidation and ferroptosis

J Tschuck, L Theilacker, I Rothenaigner… - Nature …, 2023 - nature.com
Ferroptosis is a regulated cell death modality that occurs upon iron-dependent lipid
peroxidation. Recent research has identified many regulators that induce or inhibit …