Structure and dynamics of a processive Brownian motor: the translating ribosome

J Frank, RL Gonzalez Jr - Annual review of biochemistry, 2010 - annualreviews.org
There is mounting evidence indicating that protein synthesis is driven and regulated by
mechanisms that direct stochastic, large-scale conformational fluctuations of the …

[HTML][HTML] Revisiting the central dogma one molecule at a time

C Bustamante, W Cheng, YX Mejia - Cell, 2011 - cell.com
The faithful relay and timely expression of genetic information depend on specialized
molecular machines, many of which function as nucleic acid translocases. The emergence …

Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP

CE Carbone, AB Loveland, HB Gamper Jr… - Nature …, 2021 - nature.com
During translation, a conserved GTPase elongation factor—EF-G in bacteria or eEF2 in
eukaryotes—translocates tRNA and mRNA through the ribosome. EF-G has been proposed …

Learning rates and states from biophysical time series: a Bayesian approach to model selection and single-molecule FRET data

JE Bronson, J Fei, JM Hofman, RL Gonzalez… - Biophysical journal, 2009 - cell.com
Time series data provided by single-molecule Förster resonance energy transfer (smFRET)
experiments offer the opportunity to infer not only model parameters describing molecular …

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

JA Dunkle, L Wang, MB Feldman, A Pulk, VB Chen… - Science, 2011 - science.org
During protein synthesis, the ribosome controls the movement of tRNA and mRNA by means
of large-scale structural rearrangements. We describe structures of the intact bacterial …

Quality control of protein synthesis in the early elongation stage

A Nagao, Y Nakanishi, Y Yamaguchi, Y Mishina… - Nature …, 2023 - nature.com
In the early stage of bacterial translation, peptidyl-tRNAs frequently dissociate from the
ribosome (pep-tRNA drop-off) and are recycled by peptidyl-tRNA hydrolase. Here, we …

The structural basis for release factor activation during translation termination revealed by time-resolved cryogenic electron microscopy

Z Fu, G Indrisiunaite, S Kaledhonkar, B Shah, M Sun… - Biophysical …, 2019 - cell.com
Upon encountering a stop codon in the aminoacyl site (A site) of the mRNA translating
ribosome, the ribosome recruits a class-1 release factor (RF), which induces hydrolysis of …

Ribosomal RNA 2′-O-methylation dynamics impact cell fate decisions

SJ Häfner, MD Jansson, K Altinel, KL Andersen… - Developmental Cell, 2023 - cell.com
Translational regulation impacts both pluripotency maintenance and cell differentiation. To
what degree the ribosome exerts control over this process remains unanswered …

Allosteric control of the ribosome by small-molecule antibiotics

L Wang, A Pulk, MR Wasserman, MB Feldman… - Nature structural & …, 2012 - nature.com
Protein synthesis is targeted by numerous, chemically distinct antibiotics that bind and inhibit
key functional centers of the ribosome. Using single-molecule imaging and X-ray …

Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation

J Fei, JE Bronson, JM Hofman… - Proceedings of the …, 2009 - National Acad Sciences
Determining the mechanism by which tRNAs rapidly and precisely transit through the
ribosomal A, P, and E sites during translation remains a major goal in the study of protein …