Vision Transformers in medical computer vision—A contemplative retrospection

A Parvaiz, MA Khalid, R Zafar, H Ameer, M Ali… - … Applications of Artificial …, 2023 - Elsevier
Abstract Vision Transformers (ViTs), with the magnificent potential to unravel the information
contained within images, have evolved as one of the most contemporary and dominant …

A comprehensive review of deep learning in colon cancer

I Pacal, D Karaboga, A Basturk, B Akay… - Computers in Biology …, 2020 - Elsevier
Deep learning has emerged as a leading machine learning tool in object detection and has
attracted attention with its achievements in progressing medical image analysis …

Scaling vision transformers to gigapixel images via hierarchical self-supervised learning

RJ Chen, C Chen, Y Li, TY Chen… - Proceedings of the …, 2022 - openaccess.thecvf.com
Abstract Vision Transformers (ViTs) and their multi-scale and hierarchical variations have
been successful at capturing image representations but their use has been generally …

Transformer-based unsupervised contrastive learning for histopathological image classification

X Wang, S Yang, J Zhang, M Wang, J Zhang… - Medical image …, 2022 - Elsevier
A large-scale and well-annotated dataset is a key factor for the success of deep learning in
medical image analysis. However, assembling such large annotations is very challenging …

Visual language pretrained multiple instance zero-shot transfer for histopathology images

MY Lu, B Chen, A Zhang… - Proceedings of the …, 2023 - openaccess.thecvf.com
Contrastive visual language pretraining has emerged as a powerful method for either
training new language-aware image encoders or augmenting existing pretrained models …

Data-efficient and weakly supervised computational pathology on whole-slide images

MY Lu, DFK Williamson, TY Chen, RJ Chen… - Nature biomedical …, 2021 - nature.com
Deep-learning methods for computational pathology require either manual annotation of
gigapixel whole-slide images (WSIs) or large datasets of WSIs with slide-level labels and …

Hover-net: Simultaneous segmentation and classification of nuclei in multi-tissue histology images

S Graham, QD Vu, SEA Raza, A Azam, YW Tsang… - Medical image …, 2019 - Elsevier
Nuclear segmentation and classification within Haematoxylin & Eosin stained histology
images is a fundamental prerequisite in the digital pathology work-flow. The development of …

[HTML][HTML] Federated learning for computational pathology on gigapixel whole slide images

MY Lu, RJ Chen, D Kong, J Lipkova, R Singh… - Medical image …, 2022 - Elsevier
Deep Learning-based computational pathology algorithms have demonstrated profound
ability to excel in a wide array of tasks that range from characterization of well known …

A survey on graph-based deep learning for computational histopathology

D Ahmedt-Aristizabal, MA Armin, S Denman… - … Medical Imaging and …, 2022 - Elsevier
With the remarkable success of representation learning for prediction problems, we have
witnessed a rapid expansion of the use of machine learning and deep learning for the …

Pannuke: an open pan-cancer histology dataset for nuclei instance segmentation and classification

J Gamper, N Alemi Koohbanani, K Benet… - Digital Pathology: 15th …, 2019 - Springer
In this work we present an experimental setup to semi automatically obtain exhaustive nuclei
labels across 19 different tissue types, and therefore construct a large pan-cancer dataset for …