Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
Abstract The Pathosystems Resource Integration Center (PATRIC) is the bacterial
Bioinformatics Resource Center (https://www. patricbrc. org). Recent changes to PATRIC …
Bioinformatics Resource Center (https://www. patricbrc. org). Recent changes to PATRIC …
Nextpresso: next generation sequencing expression analysis pipeline
O Graña, M Rubio-Camarillo… - Current …, 2018 - ingentaconnect.com
Background: Many bioinformatics pipelines are available nowadays to analyze
transcriptomics data produced by high-throughput RNA sequencing. They implement …
transcriptomics data produced by high-throughput RNA sequencing. They implement …
Cyclic di-GMP modulates gene expression in Lyme disease spirochetes at the tick-mammal interface to promote spirochete survival during the blood meal and tick-to …
MJ Caimano, S Dunham-Ems, AM Allard… - Infection and …, 2015 - Am Soc Microbiol
Borrelia burgdorferi, the Lyme disease spirochete, couples environmental sensing and gene
regulation primarily via the Hk1/Rrp1 two-component system (TCS) and Rrp2/RpoN/RpoS …
regulation primarily via the Hk1/Rrp1 two-component system (TCS) and Rrp2/RpoN/RpoS …
Identification of bacterial sRNA regulatory targets using ribosome profiling
Bacteria express large numbers of non-coding, regulatory RNAs known as 'small
RNAs'(sRNAs). sRNAs typically regulate expression of multiple target messenger RNAs …
RNAs'(sRNAs). sRNAs typically regulate expression of multiple target messenger RNAs …
De novo assembly and characterization of the Trichuris trichiura adult worm transcriptome using Ion Torrent sequencing
Infection with helminthic parasites, including the soil-transmitted helminth Trichuris trichiura
(human whipworm), has been shown to modulate host immune responses and …
(human whipworm), has been shown to modulate host immune responses and …
Dynamic changes in the splenic transcriptome of chickens during the early infection and progress of Marek's disease
L Dang, M Teng, HW Li, HZ Li, SM Ma, P Zhao, XJ Li… - Scientific reports, 2017 - nature.com
Abstract Gallid alphaherpesvirus 2 (GaHV2) is an oncogenic avian herpesvirus inducing
Marek's disease (MD) and rapid-onset T-cell lymphomas. To reveal molecular events in MD …
Marek's disease (MD) and rapid-onset T-cell lymphomas. To reveal molecular events in MD …
PerC Manipulates Metabolism and Surface Antigens in Enteropathogenic Escherichia coli
JL Mellies, A Platenkamp, J Osborn… - Frontiers in Cellular and …, 2017 - frontiersin.org
Enteropathogenic Escherichia coli is an important cause of profuse, watery diarrhea in
infants living in developing regions of the world. Typical strains of EPEC (tEPEC) possess a …
infants living in developing regions of the world. Typical strains of EPEC (tEPEC) possess a …
Transcriptional regulation analysis of Alzheimer's disease based on FastNCA algorithm
Q Sun, W Kong, X Mou, S Wang - Current Bioinformatics, 2019 - ingentaconnect.com
Background: Understanding the relationship between genetic variation and gene
expression is a central issue in genetics. Although many studies have identified genetic …
expression is a central issue in genetics. Although many studies have identified genetic …
A transcriptomic approach to identify novel drug efflux pumps in bacteria
The core genomes of most bacterial species include a large number of genes encoding
putative efflux pumps. The functional roles of most of these pumps are unknown, however …
putative efflux pumps. The functional roles of most of these pumps are unknown, however …
RNA-seq–Revealing Biological Insights in Bacteria
MP Santana, FF Aburjaile, MTD Parise… - Next Generation …, 2016 - books.google.com
New technologies are constantly being released and the improvements therein bring
advances not only to transcriptome, the focus of this chapter, but also to diverse areas of …
advances not only to transcriptome, the focus of this chapter, but also to diverse areas of …