Comprehensive analysis of codon bias in 13 Ganoderma mitochondrial genomes

P Wu, W Xiao, Y Luo, Z Xiong, X Chen, J He… - Frontiers in …, 2023 - frontiersin.org
Introduction Codon usage bias is a prevalent phenomenon observed across various species
and genes. However, the specific attributes of codon usage in the mitochondrial genome of …

[HTML][HTML] Characterization and Phylogenetic Analysis of the First Complete Chloroplast Genome of Shizhenia pinguicula (Orchidaceae: Orchideae)

Y Chen, Y Zhao, Q Yan, W Wu, Q Lin, G Chen, Y Zheng… - Genes, 2024 - mdpi.com
Background: Genomic analysis is crucial for better understanding the evolutionary history of
species and for their conservation. Shizhenia pinguicula is a rare medicinal plant endemic to …

Structural Characterization of Trivalvaria costata Chloroplast Genome and Molecular Evolution of rps12 Gene in Magnoliids

J Ping, X Zhong, T Wang, Y Su - Forests, 2023 - mdpi.com
Chloroplasts (cp) are important organelles in plant cells that have been widely used in
phylogenetic, molecular evolution, and gene expression studies due to their conserved …

Analysis of codon usage bias in xyloglucan endotransglycosylase (XET) genes

B Xiong, T Wang, S Huang, L Liao, X Wang… - International Journal of …, 2023 - mdpi.com
Xyloglucan endotransglycosylase (XET) genes are widely distributed in most plants, but the
codon usage bias of XET genes has remained uncharacterized. Thus, we analyzed the …

Comprehensive analysis of the first complete mitogenome and plastome of a traditional Chinese medicine Viola diffusa

C Zhang, A Rasool, H Qi, X Zou, Y Wang, Y Wang… - BMC genomics, 2024 - Springer
Background Viola diffusa is used in the formulation of various Traditional Chinese Medicines
(TCMs), including antiviral, antimicrobial, antitussive, and anti-inflammatory drugs, due to its …

[HTML][HTML] Comparative Genomics of Eight Complete Chloroplast Genomes of Phyllostachys Species

G Li, G Liu, C Liu - Forests, 2024 - mdpi.com
(1) Background: The genus Phyllostachys belongs to the subfamily Bambusoideae within
the family Gramineae. Bamboos of this genus are distinguished by their remarkable genetic …

Codon usage bias and phylogenetic analysis of chloroplast genome in 36 gracilariaceae species

T Li, Z Ma, T Ding, Y Yang, F Wang, X Wan… - Functional & Integrative …, 2024 - Springer
Gracilariaceae is a group of marine large red algae and main source of agar with important
economic and ecological value. The codon usage patterns of chloroplast genomes in 36 …

Analysis of Codon Usage Bias in Chloroplast Genomes of Dryas octopetala var. asiatica (Rosaceae)

L Ling, S Zhang, T Yang - Genes, 2024 - pmc.ncbi.nlm.nih.gov
Dryas octopetala var. asiatica, a dwarf shrub belonging to the Rosaceae family and native to
Asia, exhibits notable plasticity in photosynthesis in response to temperature variations …

Repetitive Sequences, Codon Usage Bias and Phylogenetic Analysis of the Plastome of Miliusa glochidioides

Y Gan, J Ping, X Liu, C Peng - Biochemical Genetics, 2024 - Springer
Annonaceae is the largest family in Magnoliales, exhibiting the greatest diversity among and
within genera. In this study, we conducted an analysis of repetitive sequences and codon …

De Novo Assembly and Characterization of the Transcriptome of an Omnivorous Camel Cricket (Tachycines meditationis)

JH Lu, DL Guan, SQ Xu, H Huang - International Journal of Molecular …, 2023 - mdpi.com
Tachycines meditationis (Orthoptera: Rhaphidophoridae: Tachycines) is a widely distributed
insect in eastern Asia. This species is common in urban environments, and its unique …