Ultra‐barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA

N Kane, S Sveinsson, H Dempewolf… - American Journal of …, 2012 - Wiley Online Library
• Premise of study: To reliably identify lineages below the species level such as subspecies
or varieties, we propose an extension to DNA‐barcoding using next‐generation sequencing …

Genetic characterization of the cacao cultivar CCN 51: its impact and significance on global cacao improvement and production

EJ Boza, JC Motamayor, FM Amores… - Journal of the …, 2014 - journals.ashs.org
Cacao (Theobroma cacao L.) is an important cash crop in tropical growing regions of the
world and particularly for small cacao farmers. Over the past two decades,'CCN 51'has …

Comparative analyses of chloroplast genomes of Theobroma cacao and Theobroma grandiflorum

Abdullah, S Waseem, B Mirza, I Ahmed, MT Waheed - Biologia, 2020 - Springer
Theobroma is a plant genus included in tribe Theobromeae, subfamily Byttnerioideae
Burnett and family Malvaceae. Discrepancies exist in taxonomy at family and genus level …

Geographic Patterns of Genetic Variation among Cacao (Theobroma cacao L.) Populations Based on Chloroplast Markers

HE Nieves-Orduña, M Müller, KV Krutovsky, O Gailing - Diversity, 2021 - mdpi.com
The cacao tree (Theobroma cacao L.) is native to the Amazon basin and widely cultivated in
the tropics to produce seeds, the valuable raw material for the chocolate industry …

Genetic diversity of naturalized cacao (Theobroma cacao L.) in Puerto Rico

S Cosme, HE Cuevas, D Zhang, TK Oleksyk… - Tree Genetics & …, 2016 - Springer
Identification of genetically diverse cacao with disease resistance, high productivity, and
desirable organoleptic traits is vitally important to the agricultural crop's long-term …

DNA-based differentiation of the Ecuadorian cocoa types CCN-51 and Arriba based on sequence differences in the chloroplast genome

L Herrmann, I Haase, M Blauhut, N Barz… - Journal of agricultural …, 2014 - ACS Publications
Two cocoa types, Arriba and CCN-51, are being cultivated in Ecuador. With regard to the
unique aroma, Arriba is considered a fine cocoa type, while CCN-51 is a bulk cocoa …

Complex origin of Trinitario-type Theobroma cacao (Malvaceae) from Trinidad and Tobago revealed using plastid genomics

JY Yang, M Scascitelli, LA Motilal, S Sveinsson… - Tree genetics & …, 2013 - Springer
Trinidad and Tobago has a long history of producing high-quality cacao (Theobroma cacao
L.). Cacao genotypes in Trinidad and Tobago are of a highly distinctive kind, the so-called …

Chloroplast markers for the Malvaceae and the plastome of Henderson's checkermallow (Sidalcea hendersonii S.Wats.), a rare plant from the Pacific Northwest

DM Percy, S Sveinsson, A Ponomarev, JY Yang… - BMC Research …, 2023 - Springer
Objective Sidalcea is a genus of flowering plants restricted to the west coast of North
America, commonly known as checkermallows. Remarkably, of the~ 30 recognized species …

Unique haplotypes of cacao trees as revealed by trnH-psbA chloroplast DNA

N Gutiérrez-López, I Ovando-Medina… - PeerJ, 2016 - peerj.com
Cacao trees have been cultivated in Mesoamerica for at least 4,000 years. In this study, we
analyzed sequence variation in the chloroplast DNA trnH-psbA intergenic spacer from 28 …

Simple sequence repeats in bryophyte mitochondrial genomes

CX Zhao, RL Zhu, Y Liu - Mitochondrial DNA Part A, 2016 - Taylor & Francis
Simple sequence repeats (SSRs) are thought to be common in plant mitochondrial (mt)
genomes, but have yet to be fully described for bryophytes. We screened the mt genomes of …