R Lazim, D Suh, S Choi - International journal of molecular sciences, 2020 - mdpi.com
Molecular dynamics (MD) simulation is a rigorous theoretical tool that when used efficiently could provide reliable answers to questions pertaining to the structure-function relationship …
NAMD is a molecular dynamics program designed for high-performance simulations of very large biological objects on CPU-and GPU-based architectures. NAMD offers scalable …
Accurate ranking of compounds with regards to their binding affinity to a protein using computational methods is of great interest to pharmaceutical research. Physics-based free …
Electrified interfaces play a prime role in energy technologies, from batteries and capacitors to heterogeneous electrocatalysis. The atomistic understanding and modeling of these …
W Hwang, SL Austin, A Blondel… - The Journal of …, 2024 - ACS Publications
Since its inception nearly a half century ago, CHARMM has been playing a central role in computational biochemistry and biophysics. Commensurate with the developments in …
Beyond potency, a good developability profile is a key attribute of a biological drug. Selecting and screening for such attributes early in the drug development process can save …
Amyloids, fibrillar assembly of (poly) peptide chains, are associated with neurodegenerative illnesses such as Alzheimer's and Parkinson's diseases, for which there are no cures. The …
Interest in peptide‐based supramolecular materials has grown extensively since the 1980s and the application of computational methods has paralleled this. These methods contribute …
Biocatalysis is a key technology enabling plastic recycling. However, despite advances done in the development of plastic-degrading enzymes, the molecular mechanisms that …