The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo

H Boubakri, AL De Septenville, E Viguera… - The EMBO …, 2010 - embopress.org
How living cells deal with head‐on collisions of the replication and transcription complexes
has been debated for a long time. Even in the widely studied model bacteria Escherichia …

Large-scale expansions of Friedreich's ataxia GAA• TTC repeats in an experimental human system: role of DNA replication and prevention by LNA-DNA …

A Rastokina, J Cebrián, N Mozafari… - Nucleic Acids …, 2023 - academic.oup.com
Friedreich's ataxia (FRDA) is caused by expansions of GAA• TTC repeats in the first intron of
the human FXN gene that occur during both intergenerational transmissions and in somatic …

Expression of catalytic mutants of the mtDNA helicase Twinkle and polymerase POLG causes distinct replication stalling phenotypes

S Wanrooij, S Goffart, JLO Pohjoismäki… - Nucleic acids …, 2007 - academic.oup.com
The mechanism of mitochondrial DNA replication is a subject of intense debate. One model
proposes a strand-asynchronous replication in which both strands of the circular genome …

Replication of yeast rDNA initiates downstream of transcriptionally active genes

M Muller, R Lucchini, JM Sogo - Molecular cell, 2000 - cell.com
In the yeast S. cerevisiae, ARS (autonomously replicating sequence) elements located in the
intergenic spacers of the rRNA gene locus are infrequently activated as origins of …

Supercoiling, knotting and replication fork reversal in partially replicated plasmids

L Olavarrieta, ML Martínez-Robles… - Nucleic acids …, 2002 - academic.oup.com
To study the structure of partially replicated plasmids, we cloned the Escherichia coli polar
replication terminator TerE in its active orientation at different locations in the ColE1 vector …

Knotting dynamics during DNA replication

L Olavarrieta, ML Martínez‐Robles… - Molecular …, 2002 - Wiley Online Library
The topology of plasmid DNA changes continuously as replication progresses. But the
dynamics of the process remains to be fully understood. Knotted bubbles form when topo IV …

2D gels and their third-dimension potential

JB Schvartzman, ML Martínez-Robles, V López… - Methods, 2012 - Elsevier
Two-dimensional (2D) agarose gel electrophoresis is one of the most powerful methods to
analyze the mass and shape of replication intermediates. It is often use to map replication …

DnaB helicase is unable to dissociate RNA-DNA hybrids: its implication in the polar pausing of replication forks at ColE1 origins

D Santamarı́a, G de la Cueva… - Journal of Biological …, 1998 - ASBMB
A series of plasmids were constructed containing two unidirectional ColE1 replication
origins in either the same or opposite orientations and their replication mode was …

Bi-directional replication and random termination

D Santamaría, E Viguera… - Nucleic Acids …, 2000 - academic.oup.com
Abstract Two-dimensional (2D) agarose gel electrophoresis was used to study termination of
DNA replication in a shuttle vector, YRp7′, when it replicated in Escherichia coli …

Switch from θ to σ replication of bacteriophage λ DNA: factors involved in the process and a model for its regulation

M Narajczyk, S Barańska, A Węgrzyn… - Molecular Genetics and …, 2007 - Springer
Bacteriophage λ genome is one of the classical model replicons in studies on the regulation
of DNA replication. Moreover, since genes coding for Shiga toxins are located in genomes of …