BioShell 3.0: library for processing structural biology data

JM Macnar, NA Szulc, JD Kryś… - Biomolecules, 2020 - mdpi.com
BioShell is an open-source package for processing biological data, particularly focused on
structural applications. The package provides parsers, data structures and algorithms for …

Predicting protein tertiary structure and its uncertainty analysis via particle swarm sampling

Ó Álvarez, JL Fernández-Martínez… - Journal of molecular …, 2019 - Springer
We discuss the relationship between the problem of protein tertiary structure prediction from
the amino acid sequence and the uncertainty analysis. The algorithm presented in this …

Determination and validation of PilT structure and ligand binding site in Neisseria gonorrhoeae: an in-silico study for vaccine and drug-targeted therapy

M Lotfi, MS Nabavinia, SH Shahcheraghi… - … and Research in …, 2024 - journals.lww.com
Neisseria gonorrhoeae is the cause of sexually transmitted diseases. Binding to the host
cells by type IV pili (Tfp), it has role in motility, fruiting body formation, DNA transformation …

Prediction of protein tertiary structure via regularized template classification techniques

Ó Álvarez-Machancoses, JL Fernández-Martínez… - Molecules, 2020 - mdpi.com
We discuss the use of the regularized linear discriminant analysis (LDA) as a model
reduction technique combined with particle swarm optimization (PSO) in protein tertiary …

Unsupervised Learning for Molecular Structure Discoveries

KL Kabir - 2022 - search.proquest.com
We have long known that form determines function. This is particularly true of biological
molecules, which utilize their three-dimensional structures to interface with one another and …

Protein tertiary structure prediction via svd and pso sampling

Ó Álvarez, JL Fernández-Martínez, A Cernea… - … : 6th International Work …, 2018 - Springer
We discuss the use of the Singular Value Decomposition as a model reduction technique in
Protein Tertiary Structure prediction, alongside to the uncertainty analysis associated to the …

[PDF][PDF] A Novel Soft Computing Technique For Fusion Protein Structure Prediction

P Bhargavi, U Subhashini, S Jyothi - Webology (ISSN: 1735-188X), 2022 - gdcrvpm.ac.in
Fusion protein structure prediction is one of the most significant and difficult issues in
bioinformatics. Nowadays, structural bioinformatics majorly focuses on predicting the 3D …

Determination of Optimum Degrees of Milling for Raw and Parboiled Basmati (PB1121) Rice Using Principal Component Analysis

SJ Kale, SK Jha, P Nath - Journal of Agricultural Engineering, 2019 - indianjournals.com
Pusa Basmati 1121 (PB1121) rice (longest milled grain in the world), raw and parboiled,
was dehusked and milled at 6 different degrees of milling (DOM) varied from 5–10 per cent …