Targeting of nucleus‐encoded proteins to chloroplasts in plants
P Jarvis - New phytologist, 2008 - Wiley Online Library
Most chloroplast proteins are encoded in the nucleus and synthesized on free, cytosolic
ribosomes in precursor form. Each precursor has an amino‐terminal extension called a …
ribosomes in precursor form. Each precursor has an amino‐terminal extension called a …
Deep learning for genomics: A concise overview
Advancements in genomic research such as high-throughput sequencing techniques have
driven modern genomic studies into" big data" disciplines. This data explosion is constantly …
driven modern genomic studies into" big data" disciplines. This data explosion is constantly …
Locating proteins in the cell using TargetP, SignalP and related tools
Determining the subcellular localization of a protein is an important first step toward
understanding its function. Here, we describe the properties of three well-known N-terminal …
understanding its function. Here, we describe the properties of three well-known N-terminal …
SUBA3: a database for integrating experimentation and prediction to define the SUB cellular location of proteins in A rabidopsis
SK Tanz, I Castleden, CM Hooper… - Nucleic acids …, 2012 - academic.oup.com
The subcellular location database for Arabidopsis proteins (SUBA3, http://suba. plantenergy.
uwa. edu. au) combines manual literature curation of large-scale subcellular proteomics …
uwa. edu. au) combines manual literature curation of large-scale subcellular proteomics …
Proteome Analysis of Arabidopsis Leaf Peroxisomes Reveals Novel Targeting Peptides, Metabolic Pathways, and Defense Mechanisms
We have established a protocol for the isolation of highly purified peroxisomes from mature
Arabidopsis thaliana leaves and analyzed the proteome by complementary gel-based and …
Arabidopsis thaliana leaves and analyzed the proteome by complementary gel-based and …
Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination …
Transcriptome and metabolite profiling of rice (Oryza sativa) embryo tissue during a detailed
time course formed a foundation for examining transcriptional and posttranscriptional …
time course formed a foundation for examining transcriptional and posttranscriptional …
LocateP: genome-scale subcellular-location predictor for bacterial proteins
M Zhou, J Boekhorst, C Francke, RJ Siezen - BMC bioinformatics, 2008 - Springer
Background In the past decades, various protein subcellular-location (SCL) predictors have
been developed. Most of these predictors, like TMHMM 2.0, SignalP 3.0, PrediSi and …
been developed. Most of these predictors, like TMHMM 2.0, SignalP 3.0, PrediSi and …
Deep learning for genomics: From early neural nets to modern large language models
The data explosion driven by advancements in genomic research, such as high-throughput
sequencing techniques, is constantly challenging conventional methods used in genomics …
sequencing techniques, is constantly challenging conventional methods used in genomics …
Broad 4-hydroxyphenylpyruvate dioxygenase inhibitor herbicide tolerance in soybean with an optimized enzyme and expression cassette
DL Siehl, Y Tao, H Albert, Y Dong, M Heckert… - Plant …, 2014 - academic.oup.com
With an optimized expression cassette consisting of the soybean (Glycine max) native
promoter modified for enhanced expression driving a chimeric gene coding for the soybean …
promoter modified for enhanced expression driving a chimeric gene coding for the soybean …
The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function
Choosing the right function prediction tools. The vast majority of known proteins have not yet
been characterized experimentally, and there is very little that is known about their function …
been characterized experimentally, and there is very little that is known about their function …