Insights into chromatin structure and dynamics in plants

S Rosa, P Shaw - Biology, 2013 - mdpi.com
The packaging of chromatin into the nucleus of a eukaryotic cell requires an extraordinary
degree of compaction and physical organization. In recent years, it has been shown that this …

iProStruct2D: Identifying protein structural classes by deep learning via 2D representations

L Nanni, A Lumini, F Pasquali, S Brahnam - Expert Systems with …, 2020 - Elsevier
In this paper, we address the problem of protein classification, starting from multi-view 2D
snapshots of proteins. Using JMol, a well-known protein visualization software, a set of multi …

Structural class classification of 3d protein structure based on multi-view 2d images

CH Suryanto, H Saigo, K Fukui - IEEE/ACM transactions on …, 2016 - ieeexplore.ieee.org
Computing similarity or dissimilarity between protein structures is an important task in
structural biology. A conventional method to compute protein structure dissimilarity requires …

CoMOGrad and PHOG: from computer vision to fast and accurate protein tertiary structure retrieval

R Karim, MMA Aziz, S Shatabda, MS Rahman… - Scientific reports, 2015 - nature.com
The number of entries in a structural database of proteins is increasing day by day. Methods
for retrieving protein tertiary structures from such a large database have turn out to be the …

Classification of Protein Structures Using Deep Learning Models

G Mirceva, A Naumoski… - 2022 45th Jubilee …, 2022 - ieeexplore.ieee.org
Protein molecules are very important in the organisms because they participate in different
processes. Understanding the way they interact in the cells is of high importance. In order to …

Feature Selection for Improved Classification of Protein Structures

G Mirceva, I Ivanoska, A Naumoski… - … on Information and …, 2019 - ieeexplore.ieee.org
Many research groups work on analyzing the structures of protein molecules since that may
help to gain knowledge that can be used for designing drugs. To understand the protein …

Classifying protein structures by using protein ray based descriptor, KNN and FuzzyKNN classification methods

G Mirceva, A Naumoski… - 2020 43rd International …, 2020 - ieeexplore.ieee.org
Bioinformatics community continuously studies the protein molecules and the processes in
which they are involved. To understanding these processes, the researches need to …

Protein classification by using four approaches for extraction of the protein ray-based descriptor

G Mirceva, A Kulakov - 2020 - repository.ukim.mk
The knowledge about the protein molecules, and how they influence the processes in the
humans is very worth, because it is really needed in order to develop new drugs for …

Classification of Protein Structures by Making Fuzzy-Rough Feature Selection

G Mirceva, A Naumoski… - 2020 4th International …, 2020 - ieeexplore.ieee.org
The understanding of protein structures is very important, because it is essential in
development of new drugs for different diseases. One of the most important problems in this …

Dynamic programming used to align protein structures with a spectrum is robust

A Holder, J Simon, J Strauser, J Taylor, Y Shibberu - Biology, 2013 - mdpi.com
Several efficient algorithms to conduct pairwise comparisons among large databases of
protein structures have emerged in the recent literature. The central theme is the design of a …