Peptidomics

R Hellinger, A Sigurdsson, W Wu… - Nature Reviews …, 2023 - nature.com
Peptides are biopolymers, typically consisting of 2–50 amino acids. They are biologically
produced by the cellular ribosomal machinery or by non-ribosomal enzymes and …

Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

MB Hufford, AS Seetharam, MR Woodhouse… - Science, 2021 - science.org
We report de novo genome assemblies, transcriptomes, annotations, and methylomes for
the 26 inbreds that serve as the founders for the maize nested association mapping …

IRscope: an online program to visualize the junction sites of chloroplast genomes

A Amiryousefi, J Hyvönen, P Poczai - Bioinformatics, 2018 - academic.oup.com
Motivation Genome plotting is performed using a wide range of visualizations tools each
with emphasis on a different informative dimension of the genome. These tools can provide …

[HTML][HTML] Engineering quantitative trait variation for crop improvement by genome editing

D Rodríguez-Leal, ZH Lemmon, J Man, ME Bartlett… - Cell, 2017 - cell.com
Major advances in crop yields are needed in the coming decades. However, plant breeding
is currently limited by incremental improvements in quantitative traits that often rely on …

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

FW Li, P Brouwer, L Carretero-Paulet, S Cheng… - Nature plants, 2018 - nature.com
Ferns are the closest sister group to all seed plants, yet little is known about their genomes
other than that they are generally colossal. Here, we report on the genomes of Azolla …

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

J Salojärvi, A Rambani, Z Yu, R Guyot, S Strickler… - Nature …, 2024 - nature.com
Coffea arabica, an allotetraploid hybrid of Coffea eugenioides and Coffea canephora, is the
source of approximately 60% of coffee products worldwide, and its cultivated accessions …

The genome of Chenopodium quinoa

DE Jarvis, YS Ho, DJ Lightfoot, SM Schmöckel, B Li… - Nature, 2017 - nature.com
Chenopodium quinoa (quinoa) is a highly nutritious grain identified as an important crop to
improve world food security. Unfortunately, few resources are available to facilitate its …

MaizeGDB 2018: the maize multi-genome genetics and genomics database

JL Portwood, MR Woodhouse, EK Cannon… - Nucleic acids …, 2019 - academic.oup.com
Since its 2015 update, MaizeGDB, the Maize Genetics and Genomics database, has
expanded to support the sequenced genomes of many maize inbred lines in addition to the …

Phylogenetic distribution of three pathways for propionate production within the human gut microbiota

N Reichardt, SH Duncan, P Young… - The ISME …, 2014 - academic.oup.com
Propionate is produced in the human large intestine by microbial fermentation and may help
maintain human health. We have examined the distribution of three different pathways used …