Intrinsically disordered proteins: critical components of the wetware

P Kulkarni, S Bhattacharya, S Achuthan… - Chemical …, 2022 - ACS Publications
Despite the wealth of knowledge gained about intrinsically disordered proteins (IDPs) since
their discovery, there are several aspects that remain unexplored and, hence, poorly …

Epigenetic dynamics of stem cells and cell lineage commitment: digging Waddington's canal

M Hemberger, W Dean, W Reik - Nature reviews Molecular cell biology, 2009 - nature.com
Cells of the early mammalian embryo, including pluripotent embryonic stem (ES) cells and
primordial germ cells (PGCs), are epigenetically dynamic and heterogeneous. During early …

Regulation of stem cell pluripotency and differentiation involves a mutual regulatory circuit of the NANOG, OCT4, and SOX2 pluripotency transcription factors with …

V Kashyap, NC Rezende, KB Scotland… - Stem cells and …, 2009 - liebertpub.com
Coordinated transcription factor networks have emerged as the master regulatory
mechanisms of stem cell pluripotency and differentiation. Many stem cell-specific …

Systems biology of stem cell fate and cellular reprogramming

BD MacArthur, A Ma'ayan, IR Lemischka - Nature reviews Molecular …, 2009 - nature.com
Stem cell differentiation and the maintenance of self-renewal are intrinsically complex
processes requiring the coordinated dynamic expression of hundreds of genes and proteins …

Reprogramming cell fates: reconciling rarity with robustness

S Huang - Bioessays, 2009 - Wiley Online Library
The stunning possibility of “reprogramming” differentiated somatic cells to express a
pluripotent stem cell phenotype (iPS, induced pluripotent stem cell) and the “ground state” …

Quantifying cell fate decisions for differentiation and reprogramming of a human stem cell network: landscape and biological paths

C Li, J Wang - PLoS computational biology, 2013 - journals.plos.org
Cellular reprogramming has been recently intensively studied experimentally. We
developed a global potential landscape and kinetic path framework to explore a human …

Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency

E Abranches, AMV Guedes, M Moravec… - …, 2014 - journals.biologists.com
Heterogeneous expression of the transcription factor NANOG has been linked to the
existence of various functional states in pluripotent stem cells. This heterogeneity seems to …

Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity

BD MacArthur, A Sevilla, M Lenz, FJ Müller… - Nature cell …, 2012 - nature.com
A number of key regulators of mouse embryonic stem (ES) cell identity, including the
transcription factor Nanog, show strong expression fluctuations at the single-cell level. The …

Construction and validation of a regulatory network for pluripotency and self-renewal of mouse embryonic stem cells

H Xu, YS Ang, A Sevilla, IR Lemischka… - PLoS computational …, 2014 - journals.plos.org
A 30-node signed and directed network responsible for self-renewal and pluripotency of
mouse embryonic stem cells (mESCs) was extracted from several ChIP-Seq and knockdown …

ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells

H Xu, C Baroukh, R Dannenfelser, EY Chen… - Database, 2013 - academic.oup.com
High content studies that profile mouse and human embryonic stem cells (m/hESCs) using
various genome-wide technologies such as transcriptomics and proteomics are constantly …