Single-molecule analysis and engineering of DNA motors

S Mohapatra, CT Lin, XA Feng, A Basu, T Ha - Chemical reviews, 2019 - ACS Publications
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …

Generation and repair of postreplication gaps in Escherichia coli

MM Cox, MF Goodman, JL Keck… - Microbiology and …, 2023 - Am Soc Microbiol
When replication forks encounter template lesions, one result is lesion skipping, where the
stalled DNA polymerase transiently stalls, disengages, and then reinitiates downstream to …

Studying protein-DNA interactions using atomic force microscopy

EC Beckwitt, M Kong, B Van Houten - Seminars in cell & developmental …, 2018 - Elsevier
Atomic force microscopy (AFM) has made significant contributions to the study of protein-
DNA interactions by making it possible to topographically image biological samples. A …

Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis

T Hinzke, M Kleiner, M Meister, R Schlüter… - Elife, 2021 - elifesciences.org
The hydrothermal vent tubeworm Riftia pachyptila hosts a single 16S rRNA phylotype of
intracellular sulfur-oxidizing symbionts, which vary considerably in cell morphology and …

A model for oligomeric regulation of APOBEC3G cytosine deaminase-dependent restriction of HIV

L Chelico, EJ Sacho, DA Erie, MF Goodman - Journal of Biological …, 2008 - ASBMB
APOBEC3G (A3G) restricts HIV-1 infection by catalyzing processive C→ U deaminations on
single-stranded DNA (ssDNA) with marked 3′→ 5′ deamination polarity. Here we show …

Review on the applications of atomic force microscopy imaging in proteins

J Hu, M Gao, Z Wang, Y Chen - Micron, 2022 - Elsevier
Protein is an important component of human tissues and cells, which is closely related to
various life activities. Therefore, studying the conformation of proteins can not only provide …

Double-strand DNA end-binding and sliding of the toroidal CRISPR-associated protein Csn2

Z Arslan, R Wurm, O Brener, P Ellinger… - Nucleic acids …, 2013 - academic.oup.com
The adaptive immunity of bacteria against foreign nucleic acids, mediated by CRISPR
(clustered regularly interspaced short palindromic repeats), relies on the specific …

Activation-induced deaminase, AID, is catalytically active as a monomer on single-stranded DNA

SS Brar, EJ Sacho, I Tessmer, DL Croteau, DA Erie… - DNA repair, 2008 - Elsevier
Hypermutation and class switch recombination of immunoglobulin genes are antigen-
activated mechanisms triggered by AID, a cytidine deaminase. AID deaminates cytidine …

Atomic force spectroscopy in biological complex formation: strategies and perspectives

AR Bizzarri, S Cannistraro - The journal of physical chemistry B, 2009 - ACS Publications
Atomic force spectroscopy has become a widely used technique for investigating forces,
energies, and dynamics of biomolecular interactions. These studies provide dissociation …

Inhibition of RecA protein function by the RdgC protein from Escherichia coli

JC Drees, S Chitteni-Pattu, DR McCaslin… - Journal of Biological …, 2006 - ASBMB
The Escherichia coli RdgC protein is a potential negative regulator of RecA function. RdgC
inhibits RecA protein-promoted DNA strand exchange, ATPase activity, and RecA …