[HTML][HTML] CLIP and complementary methods

M Hafner, M Katsantoni, T Köster, J Marks… - Nature Reviews …, 2021 - nature.com
RNA molecules start assembling into ribonucleoprotein (RNP) complexes during
transcription. Dynamic RNP assembly, largely directed by cis-acting elements on the RNA …

Detection, regulation, and functions of RNA N6-methyladenosine modification in plants

J Tang, S Chen, G Jia - Plant communications, 2023 - cell.com
Abstract N 6-Methyladenosine (m 6 A) is the most abundant internal chemical modification in
eukaryotic mRNA and plays important roles in gene expression regulation, including …

Phase separation of HRLP regulates flowering time in Arabidopsis

Y Zhang, S Fan, C Hua, ZWN Teo, JX Kiang, L Shen… - Science …, 2022 - science.org
RNA binding proteins mediate posttranscriptional RNA metabolism and play regulatory roles
in many developmental processes in eukaryotes. Despite their known effects on the floral …

Exploring the expanding universe of host-virus interactions mediated by viral RNA

A Castello, L Álvarez, W Kamel, L Iselin, J Hennig - Molecular Cell, 2024 - cell.com
RNA is a central molecule in RNA virus biology; however, the interactions that it establishes
with the host cell are only starting to be elucidated. In recent years, a methodology revolution …

Defining context-dependent m6A RNA methylomes in Arabidopsis

B Zhang, S Zhang, Y Wu, Y Li, L Kong, R Wu, M Zhao… - Developmental Cell, 2024 - cell.com
Summary N 6-Methyladenosine (m 6 A) prevalently occurs on cellular RNA across almost all
kingdoms of life. It governs RNA fate and is essential for development and stress responses …

Progress in genome-wide identification of RBPs and their role in mitigating stresses, and growth in plants

M Haroon, H Tariq, R Afzal, M Anas, S Nasar… - South African Journal of …, 2023 - Elsevier
Recent ribonomics research has shed light on thousands of RNA Binding Proteins (RBPs)
that regulate post-transcriptional changes critical to plant development, growth, and …

[HTML][HTML] Large-scale identification of potential phase-separation proteins from plants using a cell-free system

H Zhang, F Peng, C He, Y Liu, H Deng, X Fang - Molecular Plant, 2023 - cell.com
), a process that has been described in the field of polymer chemistry. Although the
investigation of phase separation has been carried out mostly in animal systems in the past …

Uncovering viral RNA–host cell interactions on a proteome-wide scale

L Iselin, N Palmalux, W Kamel, P Simmonds… - Trends in biochemical …, 2022 - cell.com
RNA viruses interact with a wide range of cellular RNA-binding proteins (RBPs) during their
life cycle. The prevalence of these host–virus interactions has been highlighted by new …

Mapping protein–RNA binding in plants with individual-nucleotide-resolution UV cross-linking and immunoprecipitation (plant iCLIP2)

M Lewinski, M Brüggemann, T Köster, M Reichel… - Nature …, 2024 - nature.com
Despite crucial roles of RNA-binding proteins (RBPs) in plant physiology and development,
methods for determining their transcriptome-wide binding landscape are less developed …

Toward a systems view on RNA-binding proteins and associated RNAs in plants: guilt by association

JL Mateos, D Staiger - The Plant Cell, 2023 - academic.oup.com
RNA-binding proteins (RBPs) have a broad impact on most biochemical, physiological, and
developmental processes in a plant's life. RBPs engage in an on-off relationship with their …