Using metagenomics to connect microbial community biodiversity and functions

LW Mendes, LPP Braga, AA Navarrete… - Current issues in …, 2017 - mdpi.com
Microbes constitute about a third of the Earth's biomass and are composed by an enormous
genetic diversity. In a majority of environments the microbial communities play crucial roles …

Modeling of the coral microbiome: the influence of temperature and microbial network

LFO Lima, M Weissman, M Reed, B Papudeshi… - MBio, 2020 - Am Soc Microbiol
Host-associated microbial communities are shaped by extrinsic and intrinsic factors to the
holobiont organism. Environmental factors and microbe-microbe interactions act …

Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community

RM Bowers, A Clum, H Tice, J Lim, K Singh, D Ciobanu… - Bmc Genomics, 2015 - Springer
Background The rapid development of sequencing technologies has provided access to
environments that were either once thought inhospitable to life altogether or that contain too …

Assessing taxonomic metagenome profilers with OPAL

F Meyer, A Bremges, P Belmann, S Janssen… - Genome biology, 2019 - Springer
The explosive growth in taxonomic metagenome profiling methods over the past years has
created a need for systematic comparisons using relevant performance criteria. The Open …

Exophiala chapopotensis sp. nov., an extremotolerant black yeast from an oil-polluted soil in Mexico; phylophenetic approach to species hypothesis in the …

MR Ide-Pérez, A Sánchez-Reyes, JL Folch-Mallol… - Plos one, 2024 - journals.plos.org
Exophiala is a black fungi of the family Herpotrichiellaceae that can be found in a wide
range of environments like soil, water and the human body as potential opportunistic …

Influence of taxonomic and functional content of microbial communities on the quality of fermented cocoa pulp-bean mass

J Mota-Gutierrez, I Ferrocino, M Giordano… - Applied and …, 2021 - Am Soc Microbiol
Microbial metabolism drives changes in the physicochemical properties and, consequently,
the sensory characteristics of fermented cocoa beans. In this context, information regarding …

Draft genomes of 3 cyanobacteria strains and 17 co-habiting proteobacteria assembled from metagenomes

M Berthold, M Albrecht, DA Campbell… - Microbiology Resource …, 2023 - Am Soc Microbiol
Cyanobium and Synechococcus are prominent, globally distributed cyanobacteria genera
with ecological significance. Here, we report the genomes of the marine Synechococcus sp …

Epidermal Microbiomes of Triakis semifasciata Are Consistent across Captive and Wild Environments

A Goodman, B Papudeshi, MP Doane, C Johnson… - 2021 - researchsquare.com
Background: Characterizations of sharks-microbe systems in wild environments have
outlined patterns of species-specific microbiomes; however, whether captivity affects these …

Numerical Characterization of DNA Sequences for Alignment-free Sequence Comparison–A Review

N Ramanathan, J Ramamurthy… - … Chemistry & High …, 2022 - ingentaconnect.com
Background: Biological macromolecules, namely, DNA, RNA, and protein, have their
building blocks organized in a particular sequence and the sequential arrangement …

High-Throughput Analysis to Decipher Bacterial Diversity and their Functional Properties in Freshwater Bodies

M Barooah, G Goswami, DJ Hazarika… - Microbial …, 2021 - Springer
Freshwater ecosystem encompasses varied and rich diversity of habitat conditions and is
home to diverse microbial community. Each of these diverse microbial community plays a …