Refugia revisited: individualistic responses of species in space and time

JR Stewart, AM Lister, I Barnes… - Proceedings of the …, 2010 - royalsocietypublishing.org
Climate change in the past has led to significant changes in species' distributions. However,
how individual species respond to climate change depends largely on their adaptations and …

Time‐dependent rates of molecular evolution

SYW Ho, R Lanfear, L Bromham, MJ Phillips… - Molecular …, 2011 - Wiley Online Library
For over half a century, it has been known that the rate of morphological evolution appears
to vary with the time frame of measurement. Rates of microevolutionary change, measured …

Revisiting the insect mitochondrial molecular clock: the mid-Aegean trench calibration

A Papadopoulou, I Anastasiou… - Molecular biology and …, 2010 - academic.oup.com
Phylogenetic trees in insects are frequently dated by applying a “standard” mitochondrial
DNA (mtDNA) clock estimated at 2.3% My− 1, but despite its wide use reliable calibration …

Skyline‐plot methods for estimating demographic history from nucleotide sequences

SYW Ho, B Shapiro - Molecular ecology resources, 2011 - Wiley Online Library
Estimation of demographic history from nucleotide sequences represents an important
component of many studies in molecular ecology. For example, knowledge of a population's …

Testing the Impact of Calibration on Molecular Divergence Times Using a Fossil-Rich Group: The Case of Nothofagus (Fagales)

H Sauquet, SYW Ho, MA Gandolfo, GJ Jordan… - Systematic …, 2012 - academic.oup.com
Although temporal calibration is widely recognized as critical for obtaining accurate
divergence-time estimates using molecular dating methods, few studies have evaluated the …

The influence of rate heterogeneity among sites on the time dependence of molecular rates

J Soubrier, M Steel, MSY Lee… - Molecular biology …, 2012 - academic.oup.com
Molecular evolutionary rate estimates have been shown to depend on the time period over
which they are estimated. Factors such as demographic processes, calibration errors …

Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses

C Firth, A Kitchen, B Shapiro… - Molecular biology …, 2010 - academic.oup.com
Double-stranded (ds) DNA viruses are often described as evolving through long-term
codivergent associations with their hosts, a pattern that is expected to be associated with low …

Determining species boundaries in a world full of rarity: singletons, species delimitation methods

GS Lim, M Balke, R Meier - Systematic biology, 2012 - academic.oup.com
Singletons—species only known from a single specimen—and uniques—species that have
only been collected once—are very common in biodiversity samples. Recent reviews …

Ancient hybridization and an Irish origin for the modern polar bear matriline

CJ Edwards, MA Suchard, P Lemey, JJ Welch, I Barnes… - Current biology, 2011 - cell.com
Summary Background Polar bears (Ursus maritimus) are among those species most
susceptible to the rapidly changing arctic climate, and their survival is of global concern …

Comparative phylogeography of African savannah ungulates1

ED Lorenzen, R Heller, HR Siegismund - Molecular ecology, 2012 - Wiley Online Library
The savannah biome of sub‐Saharan Africa harbours the highest diversity of ungulates
(hoofed mammals) on Earth. In this review, we compile population genetic data from 19 …