[HTML][HTML] Ethical considerations for precision psychiatry: a roadmap for research and clinical practice

P Fusar-Poli, M Manchia, N Koutsouleris… - European …, 2022 - Elsevier
Precision psychiatry is an emerging field with transformative opportunities for mental health.
However, the use of clinical prediction models carries unprecedented ethical challenges …

Graph interpretation, summarization and visualization techniques: a review and open research issues

P Mishra, S Kumar, MK Chaube - Multimedia Tools and Applications, 2023 - Springer
Graphs has been a ubiquitous way of representing heterogeneous data. There are many
studies focused on graph learning highlighting the approaches for graph data extraction …

Construction and analysis of the protein–protein interaction network for the olfactory system of the silkworm Bombyx mori

S Xin, W Zhang - Archives of Insect Biochemistry and …, 2020 - Wiley Online Library
Olfaction plays an essential role in feeding and information exchange in insects. Previous
studies on the olfaction of silkworms have provided a wealth of information about genes and …

Hypergraph-based connectivity measures for signaling pathway topologies

N Franzese, A Groce, TM Murali… - PLoS computational …, 2019 - journals.plos.org
Characterizing cellular responses to different extrinsic signals is an active area of research,
and curated pathway databases describe these complex signaling reactions. Here, we …

ARGem: a new metagenomics pipeline for antibiotic resistance genes: metadata, analysis, and visualization

X Liang, J Zhang, Y Kim, J Ho, K Liu, I Keenum… - Frontiers in …, 2023 - frontiersin.org
Antibiotic resistance is of crucial interest to both human and animal medicine. It has been
recognized that increased environmental monitoring of antibiotic resistance is needed …

NetConfer: a web application for comparative analysis of multiple biological networks

S Nagpal, KD Baksi, BK Kuntal, SS Mande - BMC biology, 2020 - Springer
Background Most biological experiments are inherently designed to compare changes or
transitions of state between conditions of interest. The advancements in data intensive …

BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language

CT Hoyt, D Domingo-Fernández… - Database, 2018 - academic.oup.com
The rapid accumulation of knowledge in the field of systems and networks biology during
recent years requires complex, but user-friendly and accessible web applications that allow …

Crowdlayout: Crowdsourced design and evaluation of biological network visualizations

DP Singh, L Lisle, TM Murali, K Luther - … of the 2018 CHI Conference on …, 2018 - dl.acm.org
Biologists often perform experiments whose results generate large quantities of data, such
as interactions between molecules in a cell, that are best represented as networks (graphs) …

Augmenting signaling pathway reconstructions

T Rubel, A Ritz - Proceedings of the 11th ACM International Conference …, 2020 - dl.acm.org
Signaling pathways drive cellular response, and understanding such pathways is
fundamental to molecular systems biology. A mounting volume of experimental protein …

Network-based prediction of polygenic disease genes involved in cell motility

M Bern, A King, DA Applewhite, A Ritz - Proceedings of the 2018 ACM …, 2018 - dl.acm.org
Schizophrenia and autism are examples of polygenic diseases caused by a multitude of
genetic variants. Recently, both diseases have been associated with disrupted neuron …