Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis

L Franzén, M Olsson Lindvall, M Hühn, V Ptasinski… - Nature Genetics, 2024 - nature.com
Idiopathic pulmonary fibrosis (IPF) is a progressive lung disease with poor prognosis and
limited treatment options. Efforts to identify effective treatments are thwarted by limited …

[HTML][HTML] EBF1-COX4I2 signaling axis promotes a myofibroblast-like phenotype in cancer-associated fibroblasts (CAFs) and is associated with an immunosuppressive …

J Li, Y Liu, S Wang, Z Lu, Q Ye, J Zhou, X Zou… - International …, 2024 - Elsevier
Immunotherapy has limited response rates in colorectal cancer (CRC) due to an
immunosuppressive tumor microenvironment (TME). Combining transcriptome sequencing …

[PDF][PDF] Spatial transcriptomics in breast cancer reveals tumour microenvironment-driven drug responses and clonal therapeutic heterogeneity

MJ Jiménez-Santos, S García-Martín… - NAR …, 2024 - academic.oup.com
Breast cancer patients are categorized into three subtypes with distinct treatment
approaches. Precision oncology has increased patient outcomes by targeting the specific …

Spatial dynamics of the developing human heart

E Lázár, R Mauron, Ž Andrusivová, J Foyer, M He… - bioRxiv, 2024 - biorxiv.org
Heart development relies on a topologically defined interplay between a diverse array of
cardiac cells. We finely curated spatial and single-cell measurements with subcellular …

Standalone single-and bi-layered human skin 3D models supported by recombinant silk feature native spatial organization

S Gkouma, N Bhalla, S Frapard, A Jönsson… - …, 2024 - iopscience.iop.org
Physiologically relevant human skin models that include key skin cell types can be used for
in vitro drug testing, skin pathology studies, or clinical applications such as skin grafts …

A pan-cancer single-cell transcriptional analysis of antigen-presenting cancer-associated fibroblasts in the tumor microenvironment

J Chen, R Chen, J Huang - Frontiers in Immunology, 2024 - frontiersin.org
Background Cancer-associated fibroblasts (CAFs) are the primary stromal cells found in
tumor microenvironment, and display high plasticity and heterogeneity. By using single-cell …

Single-cell and spatial transcriptomics analysis of human adrenal aging

N Iwahashi, H Umakoshi, M Fujita, T Fukumoto… - Molecular …, 2024 - Elsevier
Objective The human adrenal cortex comprises three functionally and structurally distinct
layers that produce layer-specific steroid hormones. With aging, the human adrenal cortex …

Gene expression of single cells mapped in tissue sections

PL Ståhl - 2024 - nature.com
Gene expression of single cells mapped in tissue sections Skip to main content Thank you for
visiting nature.com. You are using a browser version with limited support for CSS. To obtain the …

Comparison of spatial transcriptomics technologies across six cancer types

S Cervilla, D Grases, E Perez, E Musulen, FX Real… - bioRxiv, 2024 - biorxiv.org
Spatial biology experiments integrate the molecular and histological landscape of tissues to
provide a previously inaccessible view of tissue biology, unlocking the architecture of …

Scalable image-based visualization and alignment of spatial transcriptomics datasets

S Preibisch, M Innerberger, D León-Periñán… - bioRxiv, 2024 - edoc.mdc-berlin.de
We present STIM, an imaging-based computational framework focused on visualizing and
aligning high-throughput spatial sequencing datasets. STIM is built on the powerful, scalable …