Control of DNA replication timing in the 3D genome

C Marchal, J Sima, DM Gilbert - Nature Reviews Molecular Cell Biology, 2019 - nature.com
The 3D organization of mammalian chromatin was described more than 30 years ago by
visualizing sites of DNA synthesis at different times during the S phase of the cell cycle …

Applications of single-cell DNA sequencing

GD Evrony, AG Hinch, C Luo - Annual review of genomics and …, 2021 - annualreviews.org
Over the past decade, genomic analyses of single cells—the fundamental units of life—have
become possible. Single-cell DNA sequencing has shed light on biological questions that …

[HTML][HTML] Embryonic genome instability upon DNA replication timing program emergence

S Takahashi, H Kyogoku, T Hayakawa, H Miura, A Oji… - Nature, 2024 - nature.com
Faithful DNA replication is essential for genome integrity,,–. Under-replicated DNA leads to
defects in chromosome segregation, which are common during embryogenesis,,–. However …

Rif1-dependent control of replication timing

L Richards, S Das, JT Nordman - Genes, 2022 - mdpi.com
Successful duplication of the genome requires the accurate replication of billions of base
pairs of DNA within a relatively short time frame. Failure to accurately replicate the genome …

Congenital diseases of DNA replication: clinical phenotypes and molecular mechanisms

M Schmit, AK Bielinsky - International journal of molecular sciences, 2021 - mdpi.com
Deoxyribonucleic acid (DNA) replication can be divided into three major steps: initiation,
elongation and termination. Each time a human cell divides, these steps must be …

Kronos scRT: a uniform framework for single-cell replication timing analysis

S Gnan, JM Josephides, X Wu, M Spagnuolo… - Nature …, 2022 - nature.com
Mammalian genomes are replicated in a cell type-specific order and in coordination with
transcription and chromatin organization. Currently, single-cell replication studies require …

Mapping replication timing domains genome wide in single mammalian cells with single-cell DNA replication sequencing

H Miura, S Takahashi, T Shibata, K Nagao, C Obuse… - Nature …, 2020 - nature.com
Replication timing (RT) domains are stable units of chromosome structure that are regulated
in the context of development and disease. Conventional genome-wide RT mapping …

Chromatin remodeling in replication‐uncoupled maintenance DNA methylation and chromosome stability: Insights from ICF syndrome studies

M Unoki - Genes to Cells, 2021 - Wiley Online Library
Immunodeficiency, centromeric instability, and facial anomalies (ICF) syndrome is
characterized by frequent appearance of multiradial chromosomes, which are distinctive …

Mapping replication timing in single mammalian cells

DA Bartlett, V Dileep, T Baslan, DM Gilbert - Current protocols, 2022 - Wiley Online Library
Replication timing (RT) is the temporal order in which genomic DNA is replicated during S
phase. Early and late replication correlate with transcriptionally active and inactive …

The dynamical organization of the core pluripotency transcription factors responds to differentiation cues in early S-phase

C Oses, MG Francia, P Verneri… - Frontiers in Cell and …, 2023 - frontiersin.org
DNA replication in stem cells is a major challenge for pluripotency preservation and cell fate
decisions. This process involves massive changes in the chromatin architecture and the …