Network alignment and motif discovery in dynamic networks

P Cinaglia, M Cannataro - … Modeling Analysis in Health Informatics and …, 2022 - Springer
In the-omics era, bioinformatics technologies allowed the development of several
approaches useful to analyze biological systems. To provide a deep insight into a biological …

Networks as biomarkers: Uses and purposes

C Alfano, L Farina, M Petti - Genes, 2023 - mdpi.com
Networks-based approaches are often used to analyze gene expression data or protein–
protein interactions but are not usually applied to study the relationships between different …

Multilayer network alignment based on topological assessment via embeddings

P Cinaglia, M Milano, M Cannataro - BMC bioinformatics, 2023 - Springer
Background Network graphs allow modelling the real world objects in terms of interactions.
In a multilayer network, the interactions are distributed over layers (ie, intralayer and …

Identifying Candidate Gene–Disease Associations via Graph Neural Networks

P Cinaglia, M Cannataro - Entropy, 2023 - mdpi.com
Real-world objects are usually defined in terms of their own relationships or connections. A
graph (or network) naturally expresses this model though nodes and edges. In biology …

A method based on temporal embedding for the pairwise alignment of dynamic networks

P Cinaglia, M Cannataro - Entropy, 2023 - mdpi.com
In network analysis, real-world systems may be represented via graph models, where nodes
and edges represent the set of biological objects (eg, genes, proteins, molecules) and their …

[HTML][HTML] MultiGlobAl: Global alignment of multilayer networks

P Cinaglia, M Cannataro - SoftwareX, 2023 - Elsevier
In bioinformatics, networks are used for modeling biological objects (eg, genes, proteins,
drugs) as nodes, and their interactions as edges. A multilayer network is used for modeling …

Aligning cross-species interactomes for studying complex and chronic diseases

M Milano, P Cinaglia, PH Guzzi, M Cannataro - Life, 2023 - mdpi.com
Neurodegenerative diseases (NDs) are a group of complex disorders characterized by the
progressive degeneration and dysfunction of neurons in the central nervous system. NDs …

Massive parallel alignment of rna-seq reads in serverless computing

P Cinaglia, JL Vázquez-Poletti… - Big Data and Cognitive …, 2023 - mdpi.com
In recent years, the use of Cloud infrastructures for data processing has proven useful, with a
computing potential that is not affected by the limitations of a local infrastructure. In this …

Review and Assessment of Digital Twin–Oriented Social Network Simulators

J Wen, B Gabrys, K Musial - IEEE Access, 2023 - ieeexplore.ieee.org
The ability to faithfully represent real social networks is critical from the perspective of testing
various what-if scenarios which are not feasible to be implemented in a real system as the …

Serverless computing for RNA-Seq data analysis

P Cinaglia, JL Vázquez-Poletti… - 2022 IEEE International …, 2022 - ieeexplore.ieee.org
Serverless is a computing model where the infrastructure orchestration is managed by the
service provider. Amazon Web Services (AWS) offers a serverless computing service named …