FiberApp: an open-source software for tracking and analyzing polymers, filaments, biomacromolecules, and fibrous objects

I Usov, R Mezzenga - Macromolecules, 2015 - ACS Publications
Biological semiflexible polymers and filaments such as collagen, fibronectin, actin,
microtubules, coiled-coil proteins, DNA, siRNA, amyloid fibrils, etc., are ubiquitous in nature …

Ring polymers in melts and solutions: scaling and crossover

T Sakaue - Physical review letters, 2011 - APS
We propose a simple mean-field theory for the structure of ring polymer melts. By combining
the notion of topological volume fraction and a classical van der Waals theory of fluids, we …

Conformation of ring polymers in 2D constrained environments

G Witz, K Rechendorff, J Adamcik, G Dietler - Physical review letters, 2011 - APS
The combination of ring closure and spatial constraints has a fundamental effect on the
statistics of semiflexible polymers such as DNA. However, studies of the interplay between …

Simulation of semiflexible cyclic and linear chains moderately and strongly confined in nanochannels

Z Benková, P Cifra - Macromolecules, 2012 - ACS Publications
The constraints due to the chain closure in combination with the geometrical constraints of a
DNA molecule are inevitable for many biological processes. In this work, structural …

Segmental mobility of ring polymers in good and poor solvents

M Handa, P Biswas - Macromolecules, 2022 - ACS Publications
The segmental relaxation dynamics of ring polymers in dilute solutions, with both repulsive
excluded volume interactions (EVI) and attractive interactions, is investigated through Rouse …

Comparison of linear and ring DNA macromolecules moderately and strongly confined in nanochannels

Z Benková, P Cifra - Biochemical Society Transactions, 2013 - portlandpress.com
Understanding the mechanism of DNA extension in nanochannels is necessary for
interpretation of experiments in nanofluidic channel devices that have been conducted …

Excluded volume effects on tangentially driven active ring polymers

A Lamura - Physical Review E, 2024 - APS
The conformational and dynamical properties of active ring polymers are studied by
numerical simulations. The two-dimensionally confined polymer is modeled as a closed …

Segregated structures of ring polymer melts near the surface: a molecular dynamics simulation study

E Lee, YJ Jung - Soft Matter, 2015 - pubs.rsc.org
We study structural properties of a ring polymeric melt confined in a film in comparison to a
linear counterpart using molecular dynamics simulations. Local structure orderings of ring …

Conformational behavior and self-assembly of disjoint semi-flexible ring polymers adsorbed on solid substrates

Y Zhu, PBS Kumar, M Laradji - Soft Matter, 2021 - pubs.rsc.org
The conformational behavior and spatial organization of self-avoiding semi-flexible ring
polymers, that are fully adsorbed on solid substrates, are investigated via systematic coarse …

Statistical physics of ring polymers based on topological volume concept

T Sakaue - Reactive and Functional Polymers, 2019 - Elsevier
Physical properties of ring polymers are subjected to topological constraint, understanding
of which has been a significant challenge as a fundamental problem in polymer science …