T Gernhard - Journal of theoretical biology, 2008 - Elsevier
We investigate a neutral model for speciation and extinction, the constant rate birth–death process. The process is conditioned to have n extant species today, we look at the tree …
NR Polato, BA Gill, AA Shah, MM Gray… - Proceedings of the …, 2018 - National Acad Sciences
Species richness is greatest in the tropics, and much of this diversity is concentrated in mountains. Janzen proposed that reduced seasonal temperature variation selects for …
T Stadler - Journal of theoretical biology, 2010 - Elsevier
I consider the constant rate birth–death process with incomplete sampling. I calculate the density of a given tree with sampled extant and extinct individuals. This density is essential …
T Stadler - Journal of theoretical biology, 2009 - Elsevier
The constant rate birth–death process is used as a stochastic model for many biological systems, for example phylogenies or disease transmission. As the biological data are …
T Stadler - Systematic biology, 2011 - academic.oup.com
In this paper, I develop efficient tools to simulate trees with a fixed number of extant species. The tools are provided in my open source R-package TreeSim available on CRAN. The new …
Phylogenetic comparative methods have been limited in the way they model adaptation. Although some progress has been made, there are still no methods that can fully account for …
Splitting trees are those random trees where individuals give birth at a constant rate during a lifetime with general distribution, to iid copies of themselves. The width process of a splitting …
A Lambert - Stochastic models, 2008 - Taylor & Francis
We start with stochastic models of genealogies in discrete time, distinguishing models where the population size is fixed (models of Cannings, Wright–Fisher, and Moran; compositions of …
A wide range of evolutionary models for species-level (and higher) diversification have been developed. These models can be used to test evolutionary hypotheses and provide …