Bioinformatics prediction of HIV coreceptor usage

T Lengauer, O Sander, S Sierra, A Thielen… - Nature …, 2007 - nature.com
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Evaluation of eight different bioinformatics tools to predict viral tropism in different human immunodeficiency virus type 1 subtypes

C Garrido, V Roulet, N Chueca, E Poveda… - Journal of clinical …, 2008 - Am Soc Microbiol
Human immunodeficiency virus type 1 (HIV-1) tropism can be assessed using phenotypic
assays, but this is quite laborious, expensive, and time-consuming and can be made only in …

Correlation between genotypic predictions based on V3 sequences and phenotypic determination of HIV-1 tropism

S Raymond, P Delobel, M Mavigner, M Cazabat… - Aids, 2008 - journals.lww.com
Objective: Replacing phenotypic assays with simple genotypic predictions of HIV-1
coreceptor usage would make the clinical use of CCR5 antagonists easier. Design: Paired …

Bioinformatic analysis of HIV-1 entry and pathogenesis

B Aiamkitsumrit, W Dampier, G Antell… - Current HIV …, 2014 - benthamdirect.com
The evolution of human immunodeficiency virus type 1 (HIV-1) with respect to co-receptor
utilization has been shown to be relevant to HIV-1 pathogenesis and disease. The CCR5 …

CXCR4-using viruses in plasma and peripheral blood mononuclear cells during primary HIV-1 infection and impact on disease progression

S Raymond, P Delobel, M Mavigner, M Cazabat… - Aids, 2010 - journals.lww.com
Objective: Cysteine-cysteine receptor 5 (CCR5)-using viruses classically predominate
during HIV-1 primary infection but the frequency of cysteine-X-cysteine receptor 4 (CXCR4) …

When and how to use maraviroc in HIV-infected patients

V Soriano, CF Perno, R Kaiser, V Calvez, JM Gatell… - Aids, 2009 - journals.lww.com
CCR5 antagonists have recently entered the HIV armamentarium. This novel class of drugs
inhibit viral entry blocking host cellular receptors, and therefore display unique mechanisms …

High sensitivity of specific genotypic tools for detection of X4 variants in antiretroviral-experienced patients suitable to be treated with CCR5 antagonists

E Seclén, C Garrido, MM González… - Journal of …, 2010 - academic.oup.com
Objectives Evaluation of the reliability of several V3-based genotypic predictors to infer viral
tropism in patients infected with B and non-B strains of HIV-1. Methods Several genotypic …

Extreme genetic divergence is required for coreceptor switching in HIV-1 subtype C

M Coetzer, R Nedellec, T Cilliers… - JAIDS Journal of …, 2011 - journals.lww.com
Background: Coreceptor switching from CCR5 to CXCR4 is less common in subtype C HIV-
1 infection than in subtype B for reasons that are unclear. We have examined sequential …

Concordance between HIV‐1 genotypic coreceptor tropism predictions based on plasma RNA and proviral DNA

C Verhofstede, D Brudney, J Reynaerts, D Vaira… - HIV …, 2011 - Wiley Online Library
Objective The aim of the study was to evaluate the use of proviral DNA as a source of viral
genetic material for genotypic coreceptor tropism testing (GTT). Methods GTT consisted of …

Design and validation of new genotypic tools for easy and reliable estimation of HIV tropism before using CCR5 antagonists

E Poveda, E Seclén, MM González… - Journal of …, 2009 - academic.oup.com
Background Genotypic tools may allow easier and less expensive estimation of HIV tropism
before prescription of CCR5 antagonists compared with the Trofile® assay (Monogram …