Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation

C Lavialle, G Cornelis, A Dupressoir… - … of the Royal …, 2013 - royalsocietypublishing.org
The development of the emerging field of 'paleovirology'allows biologists to reconstruct the
evolutionary history of fossil endogenous retroviral sequences integrated within the genome …

Transposable elements as a source of novel repetitive DNA in the eukaryote genome

ML Zattera, DP Bruschi - Cells, 2022 - mdpi.com
The impact of transposable elements (TEs) on the evolution of the eukaryote genome has
been observed in a number of biological processes, such as the recruitment of the host's …

[HTML][HTML] Are viruses alive? The replicator paradigm sheds decisive light on an old but misguided question

EV Koonin, P Starokadomskyy - Studies in history and philosophy of …, 2016 - Elsevier
The question whether or not “viruses are alive” has caused considerable debate over many
years. Yet, the question is effectively without substance because the answer depends …

The origin of RNA interference: Adaptive or neutral evolution?

A Torri, J Jaeger, T Pradeu, MC Saleh - PLoS Biology, 2022 - journals.plos.org
The origin of RNA interference (RNAi) is usually explained by a defense-based hypothesis,
in which RNAi evolved as a defense against transposable elements (TEs) and RNA viruses …

[HTML][HTML] The changing epitome of species identification–DNA barcoding

MA Ali, G Gyulai, N Hidvegi, B Kerti… - Saudi journal of …, 2014 - Elsevier
The discipline taxonomy (the science of naming and classifying organisms, the original
bioinformatics and a basis for all biology) is fundamentally important in ensuring the quality …

Evolution of pogo, a separate superfamily of IS630-Tc1-mariner transposons, revealing recurrent domestication events in vertebrates

B Gao, Y Wang, M Diaby, W Zong, D Shen, S Wang… - Mobile DNA, 2020 - Springer
Abstracts Background Tc1/mariner and Zator, as two superfamilies of IS630-Tc1-mariner
(ITm) group, have been well-defined. However, the molecular evolution and domestication …

Passer, a highly active transposon from a fish genome, as a potential new robust genetic manipulation tool

S Wang, B Gao, C Miskey, Z Guan, Y Sang… - Nucleic Acids …, 2023 - academic.oup.com
The discovery of new, active DNA transposons can expand the range of genetic tools and
provide more options for genomic manipulation. In this study, a bioinformatics analysis …

Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates

IA Warren, M Naville, D Chalopin, P Levin… - Chromosome …, 2015 - Springer
Since their discovery, a growing body of evidence has emerged demonstrating that
transposable elements are important drivers of species diversity. These mobile elements …

How life changes itself: The Read–Write (RW) genome

JA Shapiro - Physics of Life Reviews, 2013 - Elsevier
The genome has traditionally been treated as a Read-Only Memory (ROM) subject to
change by copying errors and accidents. In this review, I propose that we need to change …

Environmental change and the evolution of genomes: Transposable elements as translators of phenotypic plasticity into genotypic variability

S Pimpinelli, L Piacentini - Functional Ecology, 2020 - Wiley Online Library
Phenotypic plasticity is generally explained as the result of epigenetic mechanisms
modifying gene expression in response to changing environmental conditions. However, the …