The biomass and biodiversity of the continental subsurface

C Magnabosco, LH Lin, H Dong, M Bomberg… - Nature …, 2018 - nature.com
Despite accounting for a significant portion of the Earth's prokaryotic biomass, controls on
the abundance and biodiversity of microorganisms residing in the continental subsurface …

Ecology and exploration of the rare biosphere

MDJ Lynch, JD Neufeld - Nature Reviews Microbiology, 2015 - nature.com
The profound influence of microorganisms on human life and global biogeochemical cycles
underlines the value of studying the biogeography of microorganisms, exploring microbial …

Precision microbiome modulation with discrete dietary fiber structures directs short-chain fatty acid production

EC Deehan, C Yang, ME Perez-Muñoz, NK Nguyen… - Cell host & …, 2020 - cell.com
Dietary fibers (DFs) impact the gut microbiome in ways often considered beneficial.
However, it is unknown if precise and predictable manipulations of the gut microbiota, and …

Small intestine microbiota regulate host digestive and absorptive adaptive responses to dietary lipids

K Martinez-Guryn, N Hubert, K Frazier, S Urlass… - Cell host & …, 2018 - cell.com
The gut microbiota play important roles in lipid metabolism and absorption. However, the
contribution of the small bowel microbiota of mammals to these diet-microbe interactions …

[HTML][HTML] Anvi'o: an advanced analysis and visualization platform for 'omics data

AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison… - PeerJ, 2015 - peerj.com
Advances in high-throughput sequencing and 'omics technologies are revolutionizing
studies of naturally occurring microbial communities. Comprehensive investigations of …

Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes

TO Delmont, C Quince, A Shaiber, ÖC Esen… - Nature …, 2018 - nature.com
Nitrogen fixation in the surface ocean impacts global marine nitrogen bioavailability and
thus microbial primary productivity. Until now, cyanobacterial populations have been viewed …

Microbial signals drive pre-leukaemic myeloproliferation in a Tet2-deficient host

M Meisel, R Hinterleitner, A Pacis, L Chen, ZM Earley… - Nature, 2018 - nature.com
Somatic mutations in te t methylcytosine dioxygenase 2 (TET2), which encodes an
epigenetic modifier enzyme, drive the development of haematopoietic malignancies,,,,,–. In …

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

M Schirmer, UZ Ijaz, R D'Amore, N Hall… - Nucleic acids …, 2015 - academic.oup.com
With read lengths of currently up to 2× 300 bp, high throughput and low sequencing costs
Illumina's MiSeq is becoming one of the most utilized sequencing platforms worldwide. The …

TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline

JC Glaubitz, TM Casstevens, F Lu, J Harriman… - PloS one, 2014 - journals.plos.org
Genotyping by sequencing (GBS) is a next generation sequencing based method that takes
advantage of reduced representation to enable high throughput genotyping of large …

Validation and development of COI metabarcoding primers for freshwater macroinvertebrate bioassessment

V Elbrecht, F Leese - Frontiers in Environmental Science, 2017 - frontiersin.org
A central challenge in the present era of biodiversity loss is to assess and manage human
impacts on freshwater ecosystems. Macroinvertebrates are an important group for such …