MoleCollar and tunnel heat map visualizations for conveying spatio‐temporo‐chemical properties across and along protein voids

J Byška, A Jurčík, ME Gröller, I Viola… - Computer Graphics …, 2015 - Wiley Online Library
Studying the characteristics of proteins and their inner void space, including their geometry,
physico‐chemical properties and dynamics are instrumental for evaluating the reactivity of …

Visibility-based approach to surface detection of tunnels in proteins

A Jurčík, J Byška, J Sochor, B Kozlíková - Proceedings of the 31st Spring …, 2015 - dl.acm.org
Structural properties of proteins substantially influence their reactivity. Thus, the presence of
pathways serving for transportation of a small molecule to the protein active site is crucial …

Exit regions of cavities in proteins

M Manak, A Anikeenko… - 2019 IEEE 19th …, 2019 - ieeexplore.ieee.org
Proteins have a complex three dimensional structure with empty cavities and tunnels in the
inter-atomic space and these spatial features are often essential for the correct biological …

[PDF][PDF] " Detection and Visualization of Protein Surface Features

A Jurčík - is.muni.cz
Biochemical research focuses on studying chemical processes in living organisms. Often,
the key substances of these processes are proteins. Proteins play important roles in …

[PDF][PDF] Geometry-based Methods for Detection of Asymmetric Tunnels in Proteins

A Jurčík - is.muni.cz
From the chemical point of view, proteins are macromolecules consisting of one or more
chains of amino acids that are connected together with the peptide bond. But from the …

[PDF][PDF] Algorithms for analysis and comparison of tunnels in protein structures.

MJ Byška - is.muni.cz
Proteins play an essential role in many biological processes. These macromolecules
perform many different tasks within each living organism. They catalyse metabolic reactions …

[PDF][PDF] Analysis and Visualization of Biomolecules

B Kozlıková - 2016 - is.muni.cz
All living organisms consist of biomolecules and understanding the complex processes and
interactions between them helps also to understand the reasons of their deficiencies and …