Endogenous fluorescence tagging by CRISPR

H Bukhari, T Müller - Trends in cell biology, 2019 - cell.com
Fluorescent proteins have revolutionized biomedical research as they are easy to use for
protein tagging, cope without fixation or permeabilization, and thus, enable live cell imaging …

Improved LbCas12a variants with altered PAM specificities further broaden the genome targeting range of Cas12a nucleases

E Toth, E Varga, PI Kulcsár, V Kocsis-Jutka… - Nucleic acids …, 2020 - academic.oup.com
The widespread use of Cas12a (formerly Cpf1) nucleases for genome engineering is limited
by their requirement for a rather long TTTV protospacer adjacent motif (PAM) sequence …

Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage

PI Kulcsár, A Tálas, K Huszár, Z Ligeti, E Tóth… - Genome biology, 2017 - Springer
Background The propensity for off-target activity of Streptococcus pyogenes Cas9 (SpCas9)
has been considerably decreased by rationally engineered variants with increased fidelity …

Ways of improving precise knock-in by genome-editing technologies

SA Smirnikhina, AA Anuchina, AV Lavrov - Human genetics, 2019 - Springer
Despite the recent discover of genome-editing methods, today we can say these
approaches have firmly entered our life. Two approaches—knocking out malfunctioning …

Establishment and application of a CRISPR–Cas12a assisted genome-editing system in Zymomonas mobilis

W Shen, J Zhang, B Geng, M Qiu, M Hu, Q Yang… - Microbial Cell …, 2019 - Springer
Background Efficient and convenient genome-editing toolkits can expedite genomic
research and strain improvement for desirable phenotypes. Zymomonas mobilis is a highly …

Blackjack mutations improve the on-target activities of increased fidelity variants of SpCas9 with 5′ G-extended sgRNAs

PI Kulcsár, A Tálas, E Tóth, A Nyeste, Z Ligeti… - Nature …, 2020 - nature.com
Increased fidelity mutants of the SpCas9 nuclease constitute the most promising approach to
mitigating its off-target effects. However, these variants are effective only in a restricted target …

Development of versatile non-homologous end joining-based knock-in module for genome editing

S Sawatsubashi, Y Joko, S Fukumoto, T Matsumoto… - Scientific reports, 2018 - nature.com
CRISPR/Cas9-based genome editing has dramatically accelerated genome engineering.
An important aspect of genome engineering is efficient knock-in technology. For improved …

BEAR reveals that increased fidelity variants can successfully reduce the mismatch tolerance of adenine but not cytosine base editors

A Tálas, DA Simon, PI Kulcsár, É Varga… - Nature …, 2021 - nature.com
Adenine and cytosine base editors (ABE, CBE) allow for precision genome engineering.
Here, Base Editor Activity Reporter (BEAR), a plasmid-based fluorescent tool is introduced …

Biallelic and gene-wide genomic substitution for endogenous intron and retroelement mutagenesis in human cells

T Ohno, T Akase, S Kono, H Kurasawa… - Nature …, 2022 - nature.com
Functional annotation of the vast noncoding landscape of the diploid human genome still
remains a major challenge of genomic research. An efficient, scarless, biallelic, and gene …

[HTML][HTML] Precision-engineered reporter cell lines reveal ABCG2 regulation in live lung cancer cells

D Kovacsics, A Brózik, B Tihanyi, Z Matula… - Biochemical …, 2020 - Elsevier
Expression of the ABCG2 multidrug transporter is a marker of cancer stem cells and a
predictor of recurrent malignant disease. Understanding how human ABCG2 expression is …