Computational prediction of metabolism: sites, products, SAR, P450 enzyme dynamics, and mechanisms

J Kirchmair, MJ Williamson, JD Tyzack… - Journal of chemical …, 2012 - ACS Publications
Metabolism of xenobiotics remains a central challenge for the discovery and development of
drugs, cosmetics, nutritional supplements, and agrochemicals. Metabolic transformations …

Structure, function, regulation and polymorphism and the clinical significance of human cytochrome P450 1A2

SF Zhou, B Wang, LP Yang, JP Liu - Drug metabolism reviews, 2010 - Taylor & Francis
Human CYP1A2 is one of the major CYPs in human liver and metabolizes a number of
clinical drugs (eg, clozapine, tacrine, tizanidine, and theophylline; n> 110), a number of …

Biotransformation of sulfamethoxazole by microalgae: Removal efficiency, pathways, and mechanisms

Y Chu, C Zhang, R Wang, X Chen, N Ren, SH Ho - Water Research, 2022 - Elsevier
Recently, the biotransformation of sulfamethoxazole (SMX) by microalgae has attracted
increasing interest. In particular, cytochrome P450 (CYP450) has been suggested to be the …

Structure-based drug design strategies in medicinal chemistry

AD Andricopulo, LB Salum… - Current topics in …, 2009 - ingentaconnect.com
A broad variety of medicinal chemistry approaches can be used for the identification of hits,
generation of leads, as well as to accelerate the development of high quality drug …

The role of water molecules in computational drug design

S de Beer, NPE Vermeulen… - Current topics in …, 2010 - ingentaconnect.com
Although water molecules are small and only consist of two different atom types, they play
various roles in cellular systems. This review discusses their influence on the binding …

Synthetic and natural compounds that interact with human cytochrome P450 1A2 and implications in drug development

B Wang, SF Zhou - Current medicinal chemistry, 2009 - ingentaconnect.com
Human cytochrome P450 1A2 (CYP1A2) is one of the major CYPs in the liver (&sim13%)
and metabolizes about 20% of clinically used drugs. CYP1A2 is a 515-residue protein with a …

Prediction of cytochrome P450 mediated metabolism

L Olsen, C Oostenbrink, FS Jørgensen - Advanced drug delivery reviews, 2015 - Elsevier
Cytochrome P450 enzymes (CYPs) form one of the most important enzyme families involved
in the metabolism of xenobiotics. CYPs comprise many isoforms, which catalyze a wide …

Modeling of interactions between xenobiotics and cytochrome P450 (CYP) enzymes

H Raunio, M Kuusisto, RO Juvonen… - Frontiers in …, 2015 - frontiersin.org
The adverse effects to humans and environment of only few chemicals are well known.
Absorption, distribution, metabolism, and excretion (ADME) are the steps of pharmaco …

Improved ligand-protein binding affinity predictions using multiple binding modes

E Stjernschantz, C Oostenbrink - Biophysical journal, 2010 - cell.com
Accurate ligand-protein binding affinity prediction, for a set of similar binders, is a major
challenge in the lead optimization stage in drug development. In general, docking and …

Enantioselective metabolism of four chiral triazole fungicides in rat liver microsomes

Z Zhang, B Gao, Z He, L Li, H Shi, M Wang - Chemosphere, 2019 - Elsevier
Triazole fungicides with one or two chiral centers are widely used worldwide. The liver
microsomes plays a major role in the metabolism and systemic elimination of chiral …