Carbohydrate-active enzymes (CAZymes) in the gut microbiome

JF Wardman, RK Bains, P Rahfeld… - Nature Reviews …, 2022 - nature.com
The 1013–1014 microorganisms present in the human gut (collectively known as the human
gut microbiota) dedicate substantial percentages of their genomes to the degradation and …

Intestinal mucus and their glycans: A habitat for thriving microbiota

AS Luis, GC Hansson - Cell Host & Microbe, 2023 - cell.com
The colon mucus layer is organized with an inner colon mucus layer that is impenetrable to
bacteria and an outer mucus layer that is expanded to allow microbiota colonization. A major …

Inflammaging: a new immune–metabolic viewpoint for age-related diseases

C Franceschi, P Garagnani, P Parini… - Nature Reviews …, 2018 - nature.com
Ageing and age-related diseases share some basic mechanistic pillars that largely
converge on inflammation. During ageing, chronic, sterile, low-grade inflammation—called …

[图书][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …

Codiversification of gut microbiota with humans

TA Suzuki, JL Fitzstevens, VT Schmidt, H Enav… - Science, 2022 - science.org
The gut microbiomes of human populations worldwide have many core microbial species in
common. However, within a species, some strains can show remarkable population …

[HTML][HTML] Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades

ND Youngblut, GH Reischer, W Walters… - Nature …, 2019 - nature.com
Multiple factors modulate microbial community assembly in the vertebrate gut, though
studies disagree as to their relative contribution. One cause may be a reliance on captive …

Co-evolution and co-speciation of host-gut bacteria systems

M Groussin, F Mazel, EJ Alm - Cell Host & Microbe, 2020 - cell.com
Mammalian gut microbiomes profoundly influence host fitness, but the processes that drive
the evolution of host-microbiome systems are poorly understood. Recent studies suggest …

Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats

SJ Song, JG Sanders, F Delsuc, J Metcalf, K Amato… - MBio, 2020 - Am Soc Microbiol
Diet and host phylogeny drive the taxonomic and functional contents of the gut microbiome
in mammals, yet it is unknown whether these patterns hold across all vertebrate lineages …

Host specificity of the gut microbiome

EK Mallott, KR Amato - Nature Reviews Microbiology, 2021 - nature.com
Developing general principles of host–microorganism interactions necessitates a robust
understanding of the eco-evolutionary processes that structure microbiota. Phylosymbiosis …

[HTML][HTML] Adaptive evolution within gut microbiomes of healthy people

S Zhao, TD Lieberman, M Poyet, KM Kauffman… - Cell host & …, 2019 - cell.com
Natural selection shapes bacterial evolution in all environments. However, the extent to
which commensal bacteria diversify and adapt within the human gut remains unclear. Here …