High throughput sequencing for plant virus detection and discovery
Over the last decade, virologists have discovered an unprecedented number of viruses
using high throughput sequencing (HTS), which led to the advancement of our knowledge …
using high throughput sequencing (HTS), which led to the advancement of our knowledge …
Plant virus metagenomics: advances in virus discovery
MJ Roossinck, DP Martin, P Roumagnac - Phytopathology, 2015 - Am Phytopath Society
In recent years plant viruses have been detected from many environments, including
domestic and wild plants and interfaces between these systems—aquatic sources, feces of …
domestic and wild plants and interfaces between these systems—aquatic sources, feces of …
Identification of viruses and viroids by next-generation sequencing and homology-dependent and homology-independent algorithms
Q Wu, SW Ding, Y Zhang, S Zhu - Annual review of …, 2015 - annualreviews.org
A fast, accurate, and full indexing of viruses and viroids in a sample for the inspection and
quarantine services and disease management is desirable but was unrealistic until recently …
quarantine services and disease management is desirable but was unrealistic until recently …
Virus detection by high-throughput sequencing of small RNAs: Large-scale performance testing of sequence analysis strategies
Recent developments in high-throughput sequencing (HTS), also called next-generation
sequencing (NGS), technologies and bioinformatics have drastically changed research on …
sequencing (NGS), technologies and bioinformatics have drastically changed research on …
Phylogeny of Geminivirus Coat Protein Sequences and Digital PCR Aid in Identifying Spissistilus festinus as a Vector of Grapevine red blotch-associated virus
Grapevine red blotch-associated virus (GRBaV) is a single-stranded DNA virus, proposed to
be a member of the family Geminiviridae, and is associated with grapevines showing red …
be a member of the family Geminiviridae, and is associated with grapevines showing red …
Grapevine red blotch-associated virus, an emerging threat to the grapevine industry
Grapevine red blotch-associated virus (GRBaV) is a newly identified virus of grapevines and
a putative member of a new genus within the family Geminiviridae. This virus is associated …
a putative member of a new genus within the family Geminiviridae. This virus is associated …
Biogenesis, function, and applications of virus-derived small RNAs in plants
C Zhang, Z Wu, Y Li, J Wu - Frontiers in microbiology, 2015 - frontiersin.org
RNA silencing, an evolutionarily conserved and sequence-specific gene-inactivation
system, has a pivotal role in antiviral defense in most eukaryotic organisms. In plants, a class …
system, has a pivotal role in antiviral defense in most eukaryotic organisms. In plants, a class …
Next-generation sequencing and genome editing in plant virology
A Hadidi, R Flores, T Candresse, M Barba - Frontiers in microbiology, 2016 - frontiersin.org
Next-generation sequencing (NGS) has been applied to plant virology since 2009. NGS
provides highly efficient, rapid, low cost DNA, or RNA high-throughput sequencing of the …
provides highly efficient, rapid, low cost DNA, or RNA high-throughput sequencing of the …
Integrating viral metagenomics into an ecological framework
Viral metagenomics has expanded our knowledge of the ecology of uncultured viruses,
within both environmental (eg, terrestrial and aquatic) and host-associated (eg, plants and …
within both environmental (eg, terrestrial and aquatic) and host-associated (eg, plants and …
Red blotch disease alters grape berry development and metabolism by interfering with the transcriptional and hormonal regulation of ripening
B Blanco-Ulate, H Hopfer… - Journal of …, 2017 - academic.oup.com
Grapevine red blotch-associated virus (GRBaV) is a major threat to the wine industry in the
USA. GRBaV infections (aka red blotch disease) compromise crop yield and berry chemical …
USA. GRBaV infections (aka red blotch disease) compromise crop yield and berry chemical …